5NO2
Rsga-gdpnp bound to the 30s ribosomal subunit (rsga assembly intermediate)
PDB DOI: 10.2210/pdb5no2/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli (Strain K12) , Escherichia Coli K-12
Deposited: 2017-04-10 Deposition Author(s): Connell, S.R. , Dhimole, N. , Fucini, P. , Gil-Carton, D. , Goto, S. , Hase, Y. , Himeno, H. , Hirata, Y. , Iturrioz, I. , Kaminishi, T. , Kikuchi, T. , Kurita, D. , Lopez-Alonso, J.P. , Mills, D.J. , Muto, A. , Naoe, C. , Schedlbauer, A. , Takemoto, C. , Zhou, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.16 Å
Rsga-gdpnp bound to the 30s ribosomal subunit (rsga assembly intermediate)
Connell, S.R. , Dhimole, N. , Fucini, P. , Gil-Carton, D. , Goto, S. , Hase, Y. , Himeno, H. , Hirata, Y. , Iturrioz, I. , Kaminishi, T. , Kikuchi, T. , Kurita, D. , Lopez-Alonso, J.P. , Mills, D.J. , Muto, A. , Naoe, C. , Schedlbauer, A. , Takemoto, C. , Zhou, S.
Primary Citation of Related Structures: 5NO2
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1534 | NA | AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S12 | L | 14 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | ATVNQLVRKPRARK |
| 30S ribosomal protein S13 | M | 114 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKP |
| 30S ribosomal protein S14 | N | 100 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW |
| 30S ribosomal protein S15 | O | 88 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR |
| 30S ribosomal protein S16 | P | 82 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA |
| 30S ribosomal protein S17 | Q | 80 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAV |
| 30S ribosomal protein S18 | R | 55 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH |
| 30S ribosomal protein S19 | S | 79 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYR |
| 30S ribosomal protein S20 | T | 86 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | ANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA |
| Small ribosomal subunit biogenesis GTPase RsgA | Z | 313 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | NLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFS |
| 30S ribosomal protein S4 | D | 205 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK |
| 30S ribosomal protein S5 | E | 155 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEI |
| 30S ribosomal protein S6 | F | 106 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAK |
| 30S ribosomal protein S7 | G | 130 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | PRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENK |
| 30S ribosomal protein S8 | H | 129 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA |
| 30S ribosomal protein S9 | I | 127 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | NQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR |
| 30S ribosomal protein S10 | J | 99 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL |
| 30S ribosomal protein S11 | K | 117 | Escherichia Coli (Strain K12) , Escherichia Coli K-12 | RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-04-10 Deposition Author(s): Connell, S.R. , Dhimole, N. , Fucini, P. , Gil-Carton, D. , Goto, S. , Hase, Y. , Himeno, H. , Hirata, Y. , Iturrioz, I. , Kaminishi, T. , Kikuchi, T. , Kurita, D. , Lopez-Alonso, J.P. , Mills, D.J. , Muto, A. , Naoe, C. , Schedlbauer, A. , Takemoto, C. , Zhou, S.