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FASTA Sequence PDB Format mmCIF Format
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5NL0

Crystal structure of a 197-bp palindromic 601l nucleosome in complex with linker histone h1

PDB DOI: 10.2210/pdb5nl0/pdb

Classification: CHROMATIN BINDING PROTEIN / DNA
Organism(s): Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603

Deposited: 2017-04-03
Deposition Author(s): Dimitrov, S. , Garcia-Saez, I. , Petosa, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 5.4 Å

5nl0
Literature

Crystal structure of a 197-bp palindromic 601l nucleosome in complex with linker histone h1

Dimitrov, S. , Garcia-Saez, I. , Petosa, C.

Primary Citation of Related Structures: 5NL0


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 135 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 135 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 K 135 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 L 102 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 129 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A type 1 G 129 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A type 1 M 129 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 122 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 122 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 N 122 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H1.0-B Z 196 Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MAENSAATPAAKPKRSKALKKSTDHPKYSDMILAAVQAEKSRSGSSRQSIQKYIKNHYKVGENADSQIKLSIKRLVTSGALKQTKGVGASGSFRLAKADEGKKPAKKPKKEIKKAVSPKKVAKPKKAAKSPAKAKKPKVAEKKVKKVAKKKPAPSPKKAKKTKTVKAKPVRASKVKKAKPSKPKAKASPKKSGRKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (197-MER) i 197 NA ACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT
DNA (197-MER) s 197 NA ACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT
DNA (197-MER) j 197 NA ACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT
DNA (197-MER) t 197 NA ACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-04-03
Deposition Author(s): Dimitrov, S. , Garcia-Saez, I. , Petosa, C.