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FASTA Sequence PDB Format mmCIF Format
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5N09

Crystal structure of l107c/a313c covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the fab fragment of the broadly neutralizing human antibody ede2 a11

PDB DOI: 10.2210/pdb5n09/pdb

Classification: Immune System/Viral Protein
Organism(s): Dengue Virus 2 , Homo Sapiens

Deposited: 2017-02-02
Deposition Author(s): Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.9 Å

5n09
Literature

Crystal structure of l107c/a313c covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the fab fragment of the broadly neutralizing human antibody ede2 a11

Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.

Primary Citation of Related Structures: 5N09


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope Glycoprotein E A 430 Dengue Virus 2 , Homo Sapiens MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGCFGKGGIVTCAKFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGTVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEICETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGLVPRGSSAWSHPQFEKGGSGGGSGGSAWSHPQFEK
Envelope Glycoprotein E B 430 Dengue Virus 2 , Homo Sapiens MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGCFGKGGIVTCAKFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGTVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEICETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGLVPRGSSAWSHPQFEKGGSGGGSGGSAWSHPQFEK
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Heavy chain H 283 Dengue Virus 2 , Homo Sapiens EVQLVESGGGLVRPGGSLRLSCAASGFSYSNHWMHWVRQAPGKGLVWVSRINSDGSTRNYADFVKGRFTISRDNAENTLYLEMNSLTADDTAVYYCVRDGVRFYYDSTGYYPDSFFKYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Heavy chain I 283 Dengue Virus 2 , Homo Sapiens EVQLVESGGGLVRPGGSLRLSCAASGFSYSNHWMHWVRQAPGKGLVWVSRINSDGSTRNYADFVKGRFTISRDNAENTLYLEMNSLTADDTAVYYCVRDGVRFYYDSTGYYPDSFFKYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Light chain L 218 Dengue Virus 2 , Homo Sapiens RSQSVLTQPVSVSGSPGQSITISCTGTSSNADTYNLVSWYQQRPGKAPKLMIYEGTKRPSGVSNRFSASKSATAASLTISGLQPEDEADYYCCSYATSRTLVFGGGTKLTVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Light chain M 218 Dengue Virus 2 , Homo Sapiens RSQSVLTQPVSVSGSPGQSITISCTGTSSNADTYNLVSWYQQRPGKAPKLMIYEGTKRPSGVSNRFSASKSATAASLTISGLQPEDEADYYCCSYATSRTLVFGGGTKLTVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-02-02
Deposition Author(s): Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.