Crystal structure of l107c/a313c covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the fab fragment of the broadly neutralizing human antibody ede2 a11
PDB DOI: 10.2210/pdb5n09/pdb
Classification: Immune System/Viral Protein Organism(s): Dengue Virus 2 , Homo Sapiens
Deposited: 2017-02-02 Deposition Author(s): Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.
Crystal structure of l107c/a313c covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the fab fragment of the broadly neutralizing human antibody ede2 a11
Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.
Primary Citation of Related Structures: 5N09
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Envelope Glycoprotein E | A | 430 | Dengue Virus 2 , Homo Sapiens | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGCFGKGGIVTCAKFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGTVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEICETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGLVPRGSSAWSHPQFEKGGSGGGSGGSAWSHPQFEK |
Envelope Glycoprotein E | B | 430 | Dengue Virus 2 , Homo Sapiens | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGCFGKGGIVTCAKFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGTVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEICETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGLVPRGSSAWSHPQFEKGGSGGGSGGSAWSHPQFEK |
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Heavy chain | H | 283 | Dengue Virus 2 , Homo Sapiens | EVQLVESGGGLVRPGGSLRLSCAASGFSYSNHWMHWVRQAPGKGLVWVSRINSDGSTRNYADFVKGRFTISRDNAENTLYLEMNSLTADDTAVYYCVRDGVRFYYDSTGYYPDSFFKYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Heavy chain | I | 283 | Dengue Virus 2 , Homo Sapiens | EVQLVESGGGLVRPGGSLRLSCAASGFSYSNHWMHWVRQAPGKGLVWVSRINSDGSTRNYADFVKGRFTISRDNAENTLYLEMNSLTADDTAVYYCVRDGVRFYYDSTGYYPDSFFKYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Light chain | L | 218 | Dengue Virus 2 , Homo Sapiens | RSQSVLTQPVSVSGSPGQSITISCTGTSSNADTYNLVSWYQQRPGKAPKLMIYEGTKRPSGVSNRFSASKSATAASLTISGLQPEDEADYYCCSYATSRTLVFGGGTKLTVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Light chain | M | 218 | Dengue Virus 2 , Homo Sapiens | RSQSVLTQPVSVSGSPGQSITISCTGTSSNADTYNLVSWYQQRPGKAPKLMIYEGTKRPSGVSNRFSASKSATAASLTISGLQPEDEADYYCCSYATSRTLVFGGGTKLTVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Method: X-RAY DIFFRACTION
Deposited Date: 2017-02-02 Deposition Author(s): Duquerroy, S. , Guardado-Calvo, P. , Rey, F. , Rouvinski, A. , Sharma, A. , Vaney, M.-C.