5MMI
Structure of the large subunit of the chloroplast ribosome
PDB DOI: 10.2210/pdb5mmi/pdb
Classification: RIBOSOME Organism(s): Eubacterium Ramulus
Deposited: 2016-12-10 Deposition Author(s): Ban, N. , Bieri, P. , Boehringer, D. , Leibundgut, M. , Saurer, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Structure of the large subunit of the chloroplast ribosome
Ban, N. , Bieri, P. , Boehringer, D. , Leibundgut, M. , Saurer, M.
Primary Citation of Related Structures: 5MMI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L31 | 0 | 130 | Eubacterium Ramulus | MVLTLSNQFLAKIPATPKTLTLPKTSSSTLRPQWSCRKSDIHPEFREDAKVYCNGELVMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEIILPPKKKSKAKKK |
| 50S ribosomal protein L2, chloroplastic | C | 272 | Eubacterium Ramulus | MAIHLYKTSTSSTRNGAVQVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIRRRSK |
| plastid ribosomal protein uL3c | D | 305 | Eubacterium Ramulus | MAAILPTFSIKSSSCTYSSSKRSLSSPKAVSLSSSVNGTPKVQSLRLSTSFVCSPNQIIKLKSVSPSRSTQLRRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKTESTDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFEELFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN |
| plastid ribosomal protein uL4c | E | 293 | Eubacterium Ramulus | MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGEKVGETFLNLKTAPSETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE |
| plastid ribosomal protein uL5c | F | 258 | Eubacterium Ramulus | MASTSLLQSTSSSFAGVRFHCRTSAAPRVGLSSFTVKAAAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAKKGRRY |
| plastid ribosomal protein uL6c | G | 220 | Eubacterium Ramulus | MSLPLPSHMKSVFLGMKVEISTSVPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLKVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK |
| plastid ribosomal protein bL9c | H | 196 | Eubacterium Ramulus | MASTTSTLSLSWSNSFHSFAGAISEPQKSPENCRVMLPIVAQKKVKKIRKIILKEDIPDLGKKGQLLDVRAGFLRNFLLPLGKAEVVTPLLLKEMKMEDERIEAEKKRVKEEAQQLARMFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKKVVFLPDIRETGEYIAELKLHPDVTAQVRVTVFAN |
| plastid ribosomal protein uL10c | I | 232 | Eubacterium Ramulus | MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG |
| 50S ribosomal protein L11, chloroplastic | J | 224 | Eubacterium Ramulus | MAQPLVAAPSSSSITSPIPRKLCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLSIVAMAPKPGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVIF |
| 50S ribosomal protein L13, chloroplastic | K | 250 | Eubacterium Ramulus | MATMACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK |
| 50S ribosomal protein L32, chloroplastic | 1 | 57 | Eubacterium Ramulus | MAVPKKRTSIYKKRIRKNIWKKKGYWAALKAFSLAKSLSTGNSKSFFVRKISNQTLE |
| 50S ribosomal protein L14, chloroplastic | L | 121 | Eubacterium Ramulus | MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEVL |
| plastid ribosomal protein uL15c | M | 271 | Eubacterium Ramulus | MASLLSLSSTPPSTANSNNYPSSTFKGNINNFRINPFNFAPLKLHLRNIVKKESTRLVVVASASSSNVSPSIGSGSETRFRLDNLGPQPGSRKKGKRKGRGHAAGQGGSCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRIPKLRGIAGGMRAGLPKYVPINLRDIEVAGFKEGEEVSLESLKAKGIINPSGRERRLPLKILGEGELSTKLQIKARAFSGSAKEKLEAAGCSVTVLPGRKKYIKESVRKNLARADEYFAKKRAASASEAESA |
| 50S ribosomal protein L16, chloroplastic | N | 135 | Eubacterium Ramulus | MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIISG |
| plastid ribosomal protein bL17c | O | 126 | Eubacterium Ramulus | MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV |
| plastid ribosomal protein uL18c | P | 166 | Eubacterium Ramulus | MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF |
| 50S ribosomal protein L19, chloroplastic | Q | 233 | Eubacterium Ramulus | MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK |
| 50S ribosomal protein L20, chloroplastic | R | 128 | Eubacterium Ramulus | MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIKKEDCKKYLEII |
| 50S ribosomal protein L21, chloroplastic | S | 256 | Eubacterium Ramulus | MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAVPV |
| 50S ribosomal protein L22, chloroplastic | T | 199 | Eubacterium Ramulus | MGFFKKKEKKAEFDVFRLYGLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMIKRPTCHITIVLRDITHFDSYDKFLESLTPKKLIALLGLMSTGRRRELLCGRFRENHKIKSFLYKIALFKRYEVM |
| 50S ribosomal protein L23, chloroplastic | U | 198 | Eubacterium Ramulus | MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPGGN |
| 50S ribosomal protein L33, chloroplastic | 2 | 66 | Eubacterium Ramulus | MAKGKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK |
| plastid ribosomal protein uL24c | V | 192 | Eubacterium Ramulus | MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA |
| plastid ribosomal protein bL27c | X | 194 | Eubacterium Ramulus | MAVTTSMSFNLMASFRGMSLSSSSSSSFFKGEFGPSSLRLPNKSPLSVSPFPLTIESAHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALIDGLVKFEKYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLILASAATDNADESAVC |
| plastid ribosomal protein bL28c | Y | 148 | Eubacterium Ramulus | MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE |
| 50S ribosomal protein L34, chloroplastic | 3 | 152 | Eubacterium Ramulus | MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLSSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRASP |
| 50S ribosomal protein L35, chloroplastic | 4 | 159 | Eubacterium Ramulus | MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV |
| 50S ribosomal protein L36, chloroplastic | 5 | 37 | Eubacterium Ramulus | MKIRASVRPICEKCRLIRRRGRIIVICSNPKHKQRQG |
| plastid ribosomal protein cL37, PSRP5 | 6 | 142 | Eubacterium Ramulus | MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVVAMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV |
| 50S ribosomal protein 6, chloroplastic | 7 | 116 | Eubacterium Ramulus | MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAEIAQSA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5S ribosomal RNA | b | 121 | NA | UAUUCUGGUGUCCUAGGCGUAGAGGAACCACACCAAUCCAUCCCGAACUUGGUGGUUAAACUCUACUGCGGUGACGAUACUGUAGGGGAGGUCCUGCGGAAAAAUAGCUCGACGCCAGGAU |
| 4.5S ribosomal RNA | w | 106 | NA | AGAGAAGGUCACGGCGAGACGAGCCGUUUAUCAUUACGAUAGGUGUCAAGUGGAAGUGCAGUGAUGUAUGCAGCUGAGGCAUCCUAACAGACCCACAGACUUGAAC |
| E-site tRNA | z | 2 | NA | CA |
| 23S ribosomal RNA | a | 2810 | NA | UUCAAACGAGGAAAGGCUUACGGUGGAUACCUAGGCACCCAGAGACGAGGAAGGGCGUAUUAAUCGACGAAAUGCUUCGGGGAGUUGAAAAUAAGCAGAGAUCCGGAGAUUCCCGAAUAGGUCAACCUUUCGAACUUCUGCUGAAUCCAUGGGCAGGCAAGAGACAACCUGGCGAACUGAAACAUCUUAGUAGCCAGAGGAAAAGAAAGCAAAAGCGAUUCCCGUAGUAGCGGCGAGCGAAAUGGGAGCAGCCUAAACCGUGAAAACGGGGUUGUGGGAGAGCAAUACAAGCGUCGUGCUGCUAGGCGAAUCAGUGGAGUGCGGAACCCUAGAUGGUGAAAGUCCAGUAGCCGAAAGCAUCACUAGCUUAUGCUCUGACCCGAGUAGCAUGGGGCACGUGGAAUCCCGUGUGAAUCAGCAAGGACCACCUUGCAAGGCUAAAUACUCCUGGGUGACCGAUAGCGAAGUAGUACCGUGAGGGAAGGGUGAAAAGAACCCCCAUCGGGGAGUGAAAUAGAACAUGAAACCGUAAGCUCUCAAGCAGUGGGAGGGGGACCAGACCCUGACCGCGUGCCUGUUGAAGAAUGAGCCGGCGACUCAUAGGCAGUGGCUUGGUUAAGGGAACCCACCGGAGCCGUAGCGAAAGCGAGUCUUCAUAGGGCAAUUGUCACUGCUUAUGGACCCGAACCUGGGUGAUCUAUCCAUGACCAGGAUGAAGCUUGGGUGAAACUAAGUGGAGGUCCGAACCGACUGAUGUUGAAGAAUCAGCGGAUGAGUUGUGGUUAGGGGUGAAAUGCCACUCGAACCCAGAGCUAGCUGGUUCUCCCCGAAAUGCGUUGAGGCGCAGCAGUUGACUGGACAUCUAGGGGUAAAGCACUGUUUCGGUGCGGGCCGCGAGAGCGGUACCAAAUCGAGGCAAACUCUGAAUACUAGAUAUGACCUCCAAAUAACAGGGGUCAAGGUCGGCCAGUGAGACGAUGGGGGAUAAGCUUCAUCGUCGAGAGGGAAACAGCCCGGAUCACCAGCUAAGGCCCCUAAAUGACCGCUCAGUGAUAAAGGAGGUAGGGGUGCAGAGACAGCCAGGAGGUUUGCCUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGAUCGAGCGCUCUUGCGCCGAAGAUGAACGGGGCUAAGCGGUCUGCCGAAGCUGUGGGAUGUAAAAAAACAUCGGUAGGGGAGCGUUCCGUGUUAGGGAGAAACGCGUGCGUGAGCCGCGUUGGACGAAGCGGAAGCGAGAAUGUCGGCUUGAGUAACGCAAACAUUGGUGAGAAUCCAAUGCCCCGAAAACCUAAGGGUUCCUCCGCAAGGUUCGUCCACGGAGGGUGAGUCAGGGCCUAAGAUCAGGCCGAAAGGCGUAGUCGAUGGACAACAGGUGAAUAUUCCUGUACUACCCCUUGUUGGUCCCGAGGGACGGAGGAGGCUAGGUUAGCCGAAAGAUGGUUAUCGGUUCAAGGACGCAAGGUGACCCUGUUUUUCAGGGUAAGAAGGGGUAGAGAAAAUGCCUCGAGCCAAUGUUCGAGUACCAGGCGCUACGGCGCUGAAGUAACCGAUGCCAUACUCCCAGGAAAAGCUCGAACGACCUUCAACAAAAGGGUACCUGUACCCGAAACCGACACAGGUAGGUAGGUAGAGAAUACCUAGGGGCGCGAGACAACUCUCUCUAAGGAACUCGGCAAAAUAGCCCCGUAACUUCGGGAGAAGGGGUGCCCCCUCACAAAGGGGGUCGAAGUGACCAGGCCCGGGCGACUGUUUACCAAAAACACAGGUCUCCGCAAAGUCGUAAGACCAUGUAUGGGGGCUGACGCCUGCCCAGUGCCGGAAGGUCAAGGAAGUUGGUGACCUGAUGACAGGGGAGCCGGCGACCGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUCUGGGCACUGUCUCGGAGAGAGGCUCGGUGAAAUAGACAUGUCUGUGAAGAUGCGGACUACCUGCACCUGGACAGAAAGACCCUAUGAAGCUUUACUGUUCCCUGGGAUUGGCUUUGGGCUUUUCCUGCGCAGCUUAGGUGGAAGGCGAAGAAGGCCCCCUUCCGGGGGGGCCCGAGCCAUCAGUGAGAUACCACUCUGGAAGAGCUAGAAUUCUAACCUUGUGUCAGGACCUACGGGCCAAGGGACAUUCUCAGGUAGACAGUUUCUAUGGGGCGUAGGCCUCCCAAAAGGUAACGGAGGCGUGCAAAGGUUUCCUCGGGCCGGACGGAGAUUGGCCCUCGAGUGCAAAGGCAGAAGGGAGCUUGACUGCAAGACCCACCCGUCGAGCAGGGACGAAAGUCGGCCUUAGUGAUCCGACGGUGCCGAGUGGAAGGGCCGUCGCUCAACGGAUAAAAGUUACUCUAGGGAUAACAGGCUGAUCUUCCCCAAGAGUUCACAUCGACGGGAAGGUUUGGCACCUCGAUGUCGGCUCUUCGCCACCUGGGGCUGUAGUAUGUUCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGUGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCAUAUCCGGUGUGGGCGUUAGAGCAUUGAGAGGACCUUUCCCUAGUACGAGAGGACCGGGAAGGACGCACCUCUGGUGUACCAGUUAUCGUGCCCACGGUAAACGCUGGGUAGCCAAGUGCGGAGCGGAUAACUGCUGAAAGCAUCUAAGUAGUAAGCCCACCCCAAGAUGAGUGCUCUCCUA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-12-10 Deposition Author(s): Ban, N. , Bieri, P. , Boehringer, D. , Leibundgut, M. , Saurer, M.