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FASTA Sequence PDB Format mmCIF Format
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5MGA

Structure of the cpf1 endonuclease r-loop complex after dna cleavage

PDB DOI: 10.2210/pdb5mga/pdb

Classification: HYDROLASE
Organism(s): Francisella Tularensis Subsp. Novicida U112 , Synthetic Construct

Deposited: 2016-11-21
Deposition Author(s): Montoya, G. , Stella, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3 Å

5mga
Literature

Structure of the cpf1 endonuclease r-loop complex after dna cleavage

Montoya, G. , Stella, S.

Primary Citation of Related Structures: 5MGA


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cpf1 A 1323 Francisella Tularensis Subsp. Novicida U112 , Synthetic Construct MSIYQEFVNKYSLSKTLRFELIPQGKTLENIKARGLILDDEKRAKDYKKAKQIIDKYHQFFIEEILSSVCISEDLLQNYSDVYFKLKKSDDDNLQKDFKSAKDTIKKQISEYIKDSEKFKNLFNQNLIDAKKGQESDLILWLKQSKDNGIELFKANSDITDIDEALEIIKSFKGWTTYFKGFHENRKNVYSSNDIPTSIIYRIVDDNLPKFLENKAKYESLKDKAPEAINYEQIKKDLAEELTFDDDYKTSEVNQRVFSLDEVFEIANFNNYLNQSGITKFNTIIGGKFVNGENTKRKGINEYINLYSQQINDKTLKKYKMSVLFKQILSDTESKSFVIDKLEDDSDVVTTMQSFYEQIAAFKTVEEKSIKETLSLLFDDLKAQKLDLSKIYFKNDKSLTDLSQQVFDDYSVIGTAVLEYITQQIAPKNLDNPSKKEQELIAKKTEKAKYLSLETILLALEEFNKHRDIDKQCRFEEILANFAAIPMIFDEIAQNKDNLAQISIKYQNQGKKDLLQASAEDDVKAIKDLLDQTNNLLHKLKIFHISQSEDKANILDKDEHFYLVFEECYFELANIVPLYNKIRNYITQKPYSDEKFKLNFENSTLANGWDKNKEPDNTAILFIKDDKYYLGVMNKKNNKIFDDKAIKENKGEGYKKIVYKLLPGANKMLPKVFFSAKSIKFYNPSEDILRIRNHSTHTKNGSPQKGYEKFEFNIEDCRKFIDFYKQSISKHPEWKDFGFRFSDTQRYNSIDEFYREVENQGYKLTFENISESYIDSVVNQGKLYLFQIYNKDFSAYSKGRPNLHTLYWKALFDERNLQDVVYKLNGEAELFYRKQSIPKKIIHPAKEAIANKNKDNPKKESVFEYDLIKDKRFTEDKFFFHCPITINFKSSGANKFNDEINLLLKEKANDVHILSIDRGERHLAYYTLVDGKGNIIKQDTFNIIGNDRMKTNYHDKLAAIEKDRDSARKDWKKINNIKEMKEGYLSQVVHEIAKLVIEYNAIVVFEDLNFGFKRGRFKVEKQVYQKLEKMLIEKLNYLVFKDNEFDKTGGVLRAYQLTAPFETFKKMGKQTGIIYYVPAGFTSKICPVTGFVNQLYPKYESVSKSQEFFSKFDKICYNLDKGYFEFSFDYKNFGDKAAKGKWTIASFGSRLINFRNSDKNHNWDTREVYPTKELEKLLKDYSIEYGHGECIKAAICGESDKKFFAKLTSVLNTILQMRNSKTGTELDYLISPVADVNGNFFDSRQAPKNMPQDADANGAYHIGLKGLMLLGRIKNNQEGKKLNLVIKNEEYFEFVQNRNNGSEFELENLYFQGELRRQASALE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (40-MER) b 40 NA AAUUUCUACUGUUGUAGAUGAGAAGUCAUUUAAUAAGGCC
DNA (26-MER) c 26 NA GGCCTTATTAAATGACTTCTCTAACG
DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3') d 12 NA CGTTAGAGAAGT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-11-21
Deposition Author(s): Montoya, G. , Stella, S.