5MDX
Cryo-em structure of the psii supercomplex from arabidopsis thaliana
PDB DOI: 10.2210/pdb5mdx/pdb
Classification: PHOTOSYNTHESIS Organism(s): Murine Norovirus Gv/Cr6/2005/Usa
Deposited: 2016-11-13 Deposition Author(s): Boekema, E.J. , Caffarri, S. , Kale, R.S. , Kouril, R. , Oostergetel, G.T. , Thunnissen, A.M.W.H. , Van Bezouwen, L.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.3 Å
Cryo-em structure of the psii supercomplex from arabidopsis thaliana
Boekema, E.J. , Caffarri, S. , Kale, R.S. , Kouril, R. , Oostergetel, G.T. , Thunnissen, A.M.W.H. , Van Bezouwen, L.S.
Primary Citation of Related Structures: 5MDX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 343 | Murine Norovirus Gv/Cr6/2005/Usa | TAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein L | L | 38 | Murine Norovirus Gv/Cr6/2005/Usa | MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN |
| Photosystem II reaction center protein M | M | 34 | Murine Norovirus Gv/Cr6/2005/Usa | MEVNILAFIATALFILVPTAFLLIIYVKTVSQND |
| Oxygen-evolving enhancer protein 1-1, chloroplastic | O | 247 | Murine Norovirus Gv/Cr6/2005/Usa | EGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFTGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE |
| Photosystem II reaction center protein T | T | 33 | Murine Norovirus Gv/Cr6/2005/Usa | MEALVYTFLLVSTLGIIFFAIFFREPPKISTKK |
| Photosystem II reaction center W protein, chloroplastic | W | 54 | Murine Norovirus Gv/Cr6/2005/Usa | LVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL |
| Photosystem II reaction center protein X | X | 116 | Murine Norovirus Gv/Cr6/2005/Usa | MASTSAMSLVTPLNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKRT |
| Photosystem II reaction center protein Z | Z | 62 | Murine Norovirus Gv/Cr6/2005/Usa | MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS |
| Chlorophyll a-b binding protein CP29.1, chloroplastic | R | 250 | Murine Norovirus Gv/Cr6/2005/Usa | AAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS |
| Chlorophyll a-b binding protein CP26, chloroplastic | S | 232 | Murine Norovirus Gv/Cr6/2005/Usa | SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL |
| Chlorophyll a-b binding protein 1, chloroplastic | G | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | N | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | Y | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 1 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 2 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 3 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 5 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 6 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Chlorophyll a-b binding protein 1, chloroplastic | 7 | 224 | Murine Norovirus Gv/Cr6/2005/Usa | GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK |
| Photosystem II CP47 reaction center protein | B | 507 | Murine Norovirus Gv/Cr6/2005/Usa | GLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWAKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRQAV |
| Chlorophyll a-b binding protein, chloroplastic | 4 | 210 | Murine Norovirus Gv/Cr6/2005/Usa | AAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALG |
| Chlorophyll a-b binding protein, chloroplastic | 8 | 210 | Murine Norovirus Gv/Cr6/2005/Usa | AAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALG |
| Photosystem II CP43 reaction center protein | C | 459 | Murine Norovirus Gv/Cr6/2005/Usa | TLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN |
| Photosystem II D2 protein | D | 352 | Murine Norovirus Gv/Cr6/2005/Usa | TIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 83 | Murine Norovirus Gv/Cr6/2005/Usa | MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF |
| Cytochrome b559 subunit beta (PsbF) | F | 39 | Murine Norovirus Gv/Cr6/2005/Usa | MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR |
| Photosystem II reaction center protein H | H | 72 | Murine Norovirus Gv/Cr6/2005/Usa | ATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVN |
| Photosystem II reaction center protein I | I | 36 | Murine Norovirus Gv/Cr6/2005/Usa | MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE |
| Photosystem II reaction center protein K | K | 37 | Murine Norovirus Gv/Cr6/2005/Usa | KLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-11-13 Deposition Author(s): Boekema, E.J. , Caffarri, S. , Kale, R.S. , Kouril, R. , Oostergetel, G.T. , Thunnissen, A.M.W.H. , Van Bezouwen, L.S.