5M3L
Single-particle cryo-em using alignment by classification (abc): the structure of lumbricus terrestris hemoglobin
PDB DOI: 10.2210/pdb5m3l/pdb
Classification: OXYGEN TRANSPORT Organism(s): Lumbricus Terrestris
Deposited: 2016-10-15 Deposition Author(s): Afanasyev, P. , Alewijnse, B. , De Carlo, S. , Linnemayr-Seer, C. , Matadeen, R. , Pannu, N.S. , Portugal, R.V. , Ravelli, R.B.G. , Schatz, M. , Van Heel, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Single-particle cryo-em using alignment by classification (abc): the structure of lumbricus terrestris hemoglobin
Afanasyev, P. , Alewijnse, B. , De Carlo, S. , Linnemayr-Seer, C. , Matadeen, R. , Pannu, N.S. , Portugal, R.V. , Ravelli, R.B.G. , Schatz, M. , Van Heel, M.
Primary Citation of Related Structures: 5M3L
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Extracellular globin-4 | A | 151 | Lumbricus Terrestris | ADDEDCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP |
| Extracellular globin-4 | E | 151 | Lumbricus Terrestris | ADDEDCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP |
| Extracellular globin-4 | I | 151 | Lumbricus Terrestris | ADDEDCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP |
| Extracellular globin-2 | B | 145 | Lumbricus Terrestris | KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH |
| Extracellular globin-2 | F | 145 | Lumbricus Terrestris | KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH |
| Extracellular globin-2 | J | 145 | Lumbricus Terrestris | KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH |
| Extracellular globin-3 | C | 153 | Lumbricus Terrestris | DEHEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRLNA |
| Extracellular globin-3 | G | 153 | Lumbricus Terrestris | DEHEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRLNA |
| Extracellular globin-3 | K | 153 | Lumbricus Terrestris | DEHEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRLNA |
| Hemoglobin chain d1 | D | 140 | Lumbricus Terrestris | ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK |
| Hemoglobin chain d1 | H | 140 | Lumbricus Terrestris | ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK |
| Hemoglobin chain d1 | L | 140 | Lumbricus Terrestris | ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK |
| Hemoglobin linker chain L1 | M | 217 | Lumbricus Terrestris | RFQYLVKNQNLHIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIVVPSSLFVCAHFNAQRY |
| Extracellular hemoglobin linker L2 subunit | N | 220 | Lumbricus Terrestris | LDPRLGANAFLIIRLDRIIEKLRTKLDEAEKIDPEHFVSEIDARVEKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLEEHD |
| Extracellular hemoglobin linker L3 subunit | O | 215 | Lumbricus Terrestris | QSHDEIIDKIIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFHRKK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-10-15 Deposition Author(s): Afanasyev, P. , Alewijnse, B. , De Carlo, S. , Linnemayr-Seer, C. , Matadeen, R. , Pannu, N.S. , Portugal, R.V. , Ravelli, R.B.G. , Schatz, M. , Van Heel, M.