5LTY
Homeobox transcription factor cdx2 bound to methylated dna
PDB DOI: 10.2210/pdb5lty/pdb
Classification: TRANSCRIPTION Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2016-09-07 Deposition Author(s): Morgunova, E. , Popov, A. , Taipale, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.66 Å
Homeobox transcription factor cdx2 bound to methylated dna
Morgunova, E. , Popov, A. , Taipale, J.
Primary Citation of Related Structures: 5LTY
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3') | a | 18 | NA | TTGTGTTTTACGACCTCC |
| DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3') | b | 18 | NA | TTGTGTTTTACGACCTCC |
| DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') | f | 18 | NA | GGAGGTCGTAAAACACAA |
| DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') | e | 18 | NA | GGAGGTCGTAAAACACAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Homeobox protein CDX-2 | K | 71 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQ |
| Homeobox protein CDX-2 | M | 71 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQ |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-09-07 Deposition Author(s): Morgunova, E. , Popov, A. , Taipale, J.