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FASTA Sequence PDB Format mmCIF Format
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5KZC

Crystal structure of an hiv-1 gp120 engineered outer domain with a man9 glycan at position n276, in complex with broadly neutralizing antibody vrc01

PDB DOI: 10.2210/pdb5kzc/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens

Deposited: 2016-07-24
Deposition Author(s): Diwanji, D. , Jardine, J.G. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.25 Å

5kzc
Literature

Crystal structure of an hiv-1 gp120 engineered outer domain with a man9 glycan at position n276, in complex with broadly neutralizing antibody vrc01

Diwanji, D. , Jardine, J.G. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.

Primary Citation of Related Structures: 5KZC


Proteins
Molecule Chains Sequence Length Organism Sequence
VRC01 Fab heavy chain H 224 Homo Sapiens QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSSPSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
VRC01 Fab heavy chain B 224 Homo Sapiens QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSSPSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
VRC01 Fab heavy chain E 224 Homo Sapiens QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSSPSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Engineered outer domain of gp120 A 182 Homo Sapiens DTITLPCRPAPPPHCSSNITGLILTRDGGNSNAESEIFRPGGGDMRDIARCQIAGTVVSSQLFLNGSLAEEEVVIRSVNFTDNAKSICVQLATSVEIACTGAGHCAISRAKWANTLKQIASKLREQFGNAKTIIFKQSSGGDPEIVTHWFNCGGEFFYCASTQLFASTWFASTGTKHHHHHH
Engineered outer domain of gp120 C 182 Homo Sapiens DTITLPCRPAPPPHCSSNITGLILTRDGGNSNAESEIFRPGGGDMRDIARCQIAGTVVSSQLFLNGSLAEEEVVIRSVNFTDNAKSICVQLATSVEIACTGAGHCAISRAKWANTLKQIASKLREQFGNAKTIIFKQSSGGDPEIVTHWFNCGGEFFYCASTQLFASTWFASTGTKHHHHHH
Engineered outer domain of gp120 F 182 Homo Sapiens DTITLPCRPAPPPHCSSNITGLILTRDGGNSNAESEIFRPGGGDMRDIARCQIAGTVVSSQLFLNGSLAEEEVVIRSVNFTDNAKSICVQLATSVEIACTGAGHCAISRAKWANTLKQIASKLREQFGNAKTIIFKQSSGGDPEIVTHWFNCGGEFFYCASTQLFASTWFASTGTKHHHHHH
VRC01 Fab light chain L 210 Homo Sapiens EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
VRC01 Fab light chain D 210 Homo Sapiens EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
VRC01 Fab light chain G 210 Homo Sapiens EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-07-24
Deposition Author(s): Diwanji, D. , Jardine, J.G. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.