5KKQ
Homo sapiens ccctc-binding factor (ctcf) znf3-7 and dna complex structure
PDB DOI: 10.2210/pdb5kkq/pdb
Classification: TRANSCRIPTION/DNA Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2016-06-22 Deposition Author(s): Cheng, X. , Hashimoto, H. , Wang, D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.744 Å
Homo sapiens ccctc-binding factor (ctcf) znf3-7 and dna complex structure
Cheng, X. , Hashimoto, H. , Wang, D.
Primary Citation of Related Structures: 5KKQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transcriptional repressor CTCF | A | 150 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GPLGSPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQ |
| Transcriptional repressor CTCF | D | 150 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GPLGSPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3') | b | 17 | NA | TAGCGCCCCCTGCTGGC |
| DNA (5'-D(*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3') | e | 17 | NA | TAGCGCCCCCTGCTGGC |
| DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*A)-3') | c | 17 | NA | GCCAGCAGGGGGCGCTA |
| DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*A)-3') | f | 17 | NA | GCCAGCAGGGGGCGCTA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-06-22 Deposition Author(s): Cheng, X. , Hashimoto, H. , Wang, D.