PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5KGF

Structural model of 53bp1 bound to a ubiquitylated and methylated nucleosome, at 4.5 a resolution

PDB DOI: 10.2210/pdb5kgf/pdb

Classification: STRUCTURAL PROTEIN/DNA
Organism(s): Homo Sapiens , Synthetic Construct , Xenopus Laevis

Deposited: 2016-06-13
Deposition Author(s): Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.54 Å

5kgf
Literature

Structural model of 53bp1 bound to a ubiquitylated and methylated nucleosome, at 4.5 a resolution

Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.

Primary Citation of Related Structures: 5KGF


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Homo Sapiens , Synthetic Construct , Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Homo Sapiens , Synthetic Construct , Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 130 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKQGGKARARAKSRSSRAGLQFPVGRVHRLLRRGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1 G 130 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKQGGKARARAKSRSSRAGLQFPVGRVHRLLRRGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-C/E/F/G/I D 126 Homo Sapiens , Synthetic Construct , Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 1-C/E/F/G/I H 126 Homo Sapiens , Synthetic Construct , Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Tumor suppressor p53-binding protein 1 L 21 Homo Sapiens , Synthetic Construct , Xenopus Laevis LTKAADISLDNLVEGKRKRRS
Tumor suppressor p53-binding protein 1 K 21 Homo Sapiens , Synthetic Construct , Xenopus Laevis LTKAADISLDNLVEGKRKRRS
Ubiquitin O 76 Homo Sapiens , Synthetic Construct , Xenopus Laevis MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Ubiquitin M 76 Homo Sapiens , Synthetic Construct , Xenopus Laevis MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2016-06-13
Deposition Author(s): Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.