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5KGF

Structural model of 53bp1 bound to a ubiquitylated and methylated nucleosome, at 4.5 a resolution

PDB DOI: 10.2210/pdb5kgf/pdb

Classification: STRUCTURAL PROTEIN/DNA
Organism(s): Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603

Deposited: 2016-06-13
Deposition Author(s): Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.54 Å

5kgf
Literature

Structural model of 53bp1 bound to a ubiquitylated and methylated nucleosome, at 4.5 a resolution

Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.

Primary Citation of Related Structures: 5KGF


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 130 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKQGGKARARAKSRSSRAGLQFPVGRVHRLLRRGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1 G 130 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MSGRGKQGGKARARAKSRSSRAGLQFPVGRVHRLLRRGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-C/E/F/G/I D 126 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 1-C/E/F/G/I H 126 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Tumor suppressor p53-binding protein 1 L 21 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 LTKAADISLDNLVEGKRKRRS
Tumor suppressor p53-binding protein 1 K 21 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 LTKAADISLDNLVEGKRKRRS
Ubiquitin O 76 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Ubiquitin M 76 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2016-06-13
Deposition Author(s): Benlekbir, S. , Durocher, D. , Rubinstein, J.L. , Sicheri, F. , Wilson, M.D.