5KEN
Ebov gp in complex with variable fab domains of iggs c4g7 and c13c6
PDB DOI: 10.2210/pdb5ken/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76)
Deposited: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.3 Å
Ebov gp in complex with variable fab domains of iggs c4g7 and c13c6
Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Primary Citation of Related Structures: 5KEN
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ebola surface glycoprotein, GP1 | A | 276 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSF |
| Ebola surface glycoprotein, GP1 | E | 276 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSF |
| Ebola surface glycoprotein, GP1 | K | 276 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSF |
| Ebola surface glycoprotein, GP2 | B | 113 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW |
| Ebola surface glycoprotein, GP2 | F | 113 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW |
| Ebola surface glycoprotein, GP2 | M | 113 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW |
| c4G7 variable Fab domain heavy chain | C | 118 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS |
| c4G7 variable Fab domain heavy chain | G | 118 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS |
| c4G7 variable Fab domain heavy chain | N | 118 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS |
| c4G7 variable Fab domain light chain | D | 107 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK |
| c4G7 variable Fab domain light chain | H | 107 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK |
| c4G7 variable Fab domain light chain | O | 107 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK |
| c13C6 variable Fab domain light chain | I | 107 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| c13C6 variable Fab domain light chain | P | 107 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| c13C6 variable Fab domain heavy chain | J | 121 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain heavy chain | Q | 121 | Homo Sapiens , Zaire Ebolavirus , Zaire Ebolavirus (Strain Mayinga-76) | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.