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5KEM
Ebov sgp in complex with variable fab domains of iggs c13c6 and bdbv91
PDB DOI: 10.2210/pdb5kem/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Salmonella Enterica , Adeno-Associated Virus 5
Deposited: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.5 Å
Ebov sgp in complex with variable fab domains of iggs c13c6 and bdbv91
Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Primary Citation of Related Structures: 5KEM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| BDBV91 variable Fab domain light chain | C | 107 | Salmonella Enterica , Adeno-Associated Virus 5 | DIQMTQSPSSLSASVGDRVTITCRATESIGIYLNWYQRKPGKAPNLLIFATSSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYFCQQGFSSPFSFGQGTRLEIK |
| BDBV91 variable Fab domain light chain | H | 107 | Salmonella Enterica , Adeno-Associated Virus 5 | DIQMTQSPSSLSASVGDRVTITCRATESIGIYLNWYQRKPGKAPNLLIFATSSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYFCQQGFSSPFSFGQGTRLEIK |
| BDBV91 variable Fab domain heavy chain | B | 121 | Salmonella Enterica , Adeno-Associated Virus 5 | QVQLVQSGAELKPPGASVKVSCKPSGYTFTDYYIHWVRQAPGQGLEWMGWINPKSGETHYAQKFRGWVTLTRDTSISTTYMDLTRLKSDDTAVYFCARGDLETTIFFYNAVDVWGQGTLVT |
| BDBV91 variable Fab domain heavy chain | G | 121 | Salmonella Enterica , Adeno-Associated Virus 5 | QVQLVQSGAELKPPGASVKVSCKPSGYTFTDYYIHWVRQAPGQGLEWMGWINPKSGETHYAQKFRGWVTLTRDTSISTTYMDLTRLKSDDTAVYFCARGDLETTIFFYNAVDVWGQGTLVT |
| c13C6 variable Fab domain heavy chain | D | 121 | Salmonella Enterica , Adeno-Associated Virus 5 | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain heavy chain | I | 121 | Salmonella Enterica , Adeno-Associated Virus 5 | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain light chain | E | 107 | Salmonella Enterica , Adeno-Associated Virus 5 | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| c13C6 variable Fab domain light chain | J | 107 | Salmonella Enterica , Adeno-Associated Virus 5 | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| Ebola secreted glycoprotein | A | 232 | Salmonella Enterica , Adeno-Associated Virus 5 | CRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTT |
| Ebola secreted glycoprotein | F | 232 | Salmonella Enterica , Adeno-Associated Virus 5 | CRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.