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5KEL
Ebov gp in complex with variable fab domains of iggs c2g4 and c13c6
PDB DOI: 10.2210/pdb5kel/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963)
Deposited: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.3 Å
Ebov gp in complex with variable fab domains of iggs c2g4 and c13c6
Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.
Primary Citation of Related Structures: 5KEL
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ebola surface glycoprotein, GP1 | A | 469 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSNGAKNISGQSPARTSSDPGTNTTTEDHKIMASENSSAMVQVHSQGREAAVSHLTTLATISTSPQSLTTKPGPDNSTHNTPVYKLDISEATQVEQHHRRTDNDSTASDTPSATTAAGPPKAENTNTSKSTDFLDPATTTSPQNHSETAGNNNTHHQDTGEESASSGKLGLITNTIAGVAGLITGGRRTRR |
| Ebola surface glycoprotein, GP1 | E | 469 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSNGAKNISGQSPARTSSDPGTNTTTEDHKIMASENSSAMVQVHSQGREAAVSHLTTLATISTSPQSLTTKPGPDNSTHNTPVYKLDISEATQVEQHHRRTDNDSTASDTPSATTAAGPPKAENTNTSKSTDFLDPATTTSPQNHSETAGNNNTHHQDTGEESASSGKLGLITNTIAGVAGLITGGRRTRR |
| Ebola surface glycoprotein, GP1 | F | 469 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSNGAKNISGQSPARTSSDPGTNTTTEDHKIMASENSSAMVQVHSQGREAAVSHLTTLATISTSPQSLTTKPGPDNSTHNTPVYKLDISEATQVEQHHRRTDNDSTASDTPSATTAAGPPKAENTNTSKSTDFLDPATTTSPQNHSETAGNNNTHHQDTGEESASSGKLGLITNTIAGVAGLITGGRRTRR |
| Ebola surface glycoprotein, GP2 | B | 143 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPDLEVDDDD |
| Ebola surface glycoprotein, GP2 | G | 143 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPDLEVDDDD |
| Ebola surface glycoprotein, GP2 | I | 143 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPDLEVDDDD |
| c2G4 variable Fab domain heavy chain | H | 120 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EVQLQESGGGLMQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKRSVYLQMNTLRAEDTGIYYCTRGNGNYRAMDYWGQGTSVTVS |
| c2G4 variable Fab domain heavy chain | P | 120 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EVQLQESGGGLMQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKRSVYLQMNTLRAEDTGIYYCTRGNGNYRAMDYWGQGTSVTVS |
| c2G4 variable Fab domain heavy chain | Q | 120 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | EVQLQESGGGLMQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKRSVYLQMNTLRAEDTGIYYCTRGNGNYRAMDYWGQGTSVTVS |
| c2G4 variable Fab domain light chain | L | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIQMTQSPASLSVSVGETVSITCRASENIYSSLAWYQQKQGKSPQLLVYSATILADGVPSRFSGSGSGTQYSLKINSLQSEDFGTYYCQHFWGTPYTFGGGTKLEIK |
| c2G4 variable Fab domain light chain | T | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIQMTQSPASLSVSVGETVSITCRASENIYSSLAWYQQKQGKSPQLLVYSATILADGVPSRFSGSGSGTQYSLKINSLQSEDFGTYYCQHFWGTPYTFGGGTKLEIK |
| c2G4 variable Fab domain light chain | U | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIQMTQSPASLSVSVGETVSITCRASENIYSSLAWYQQKQGKSPQLLVYSATILADGVPSRFSGSGSGTQYSLKINSLQSEDFGTYYCQHFWGTPYTFGGGTKLEIK |
| c13C6 variable Fab domain heavy chain | C | 121 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain heavy chain | J | 121 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain heavy chain | M | 121 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS |
| c13C6 variable Fab domain light chain | D | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| c13C6 variable Fab domain light chain | N | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
| c13C6 variable Fab domain light chain | O | 107 | Salmonella Enterica , Adeno-Associated Virus 5 , Cydia Pomonella Granulosis Virus (Isolate Mexico/1963) | DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-06-09 Deposition Author(s): Andersen, K.G. , Cottrell, C.A. , Crowe Jr., J.E. , De Val, N. , Flyak, A.I. , Fusco, M.L. , Hastie, K.M. , Murin, C.D. , Pallesen, J. , Saphire, E.O. , Turner, H.L. , Ward, A.B. , Zeitlin, L.