PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5KD7

Crystal structure of murine mhc-i h-2dd in complex with murine beta2-microglobulin and a variant of peptide (pv9) of hiv gp120 mn isolate (igpgrafyv)

PDB DOI: 10.2210/pdb5kd7/pdb

Classification: IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus

Deposited: 2016-06-07
Deposition Author(s): Jiang, J. , Margulies, D. , Natarajan, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å

5kd7
Literature

Crystal structure of murine mhc-i h-2dd in complex with murine beta2-microglobulin and a variant of peptide (pv9) of hiv gp120 mn isolate (igpgrafyv)

Jiang, J. , Margulies, D. , Natarajan, K.

Primary Citation of Related Structures: 5KD7


Proteins
Molecule Chains Sequence Length Organism Sequence
H-2 class I histocompatibility antigen, D-D alpha chain A 275 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGK
H-2 class I histocompatibility antigen, D-D alpha chain C 275 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGK
H-2 class I histocompatibility antigen, D-D alpha chain F 275 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGK
H-2 class I histocompatibility antigen, D-D alpha chain I 275 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGK
Beta-2-microglobulin B 100 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Beta-2-microglobulin D 100 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Beta-2-microglobulin G 100 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Beta-2-microglobulin J 100 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Peptide (PV9) of HIV gp120 MN isolate (IGPGRAFYV) P 9 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus IGPGRAFYV
Peptide (PV9) of HIV gp120 MN isolate (IGPGRAFYV) E 9 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus IGPGRAFYV
Peptide (PV9) of HIV gp120 MN isolate (IGPGRAFYV) H 9 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus IGPGRAFYV
Peptide (PV9) of HIV gp120 MN isolate (IGPGRAFYV) K 9 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Mn) , Mus Musculus IGPGRAFYV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-06-07
Deposition Author(s): Jiang, J. , Margulies, D. , Natarajan, K.