5KAI
Nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd illumination (2f) at 2.8 a resolution
PDB DOI: 10.2210/pdb5kai/pdb
Classification: ELECTRON TRANSPORT Organism(s): Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2016-06-01 Deposition Author(s): Adams, P.D. , Afonine, P.V. , Alonso-Mori, R. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Dobbek, H. , Evans, G. , Fuller, F. , Gul, S. , Hunter, M.S. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Laksmono, H. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Sierra, R.G. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Waterman, D.G. , Weis, W.I. , Weng, T.-C. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A. , Zwart, P.H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.80001 Å
Nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd illumination (2f) at 2.8 a resolution
Adams, P.D. , Afonine, P.V. , Alonso-Mori, R. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Dobbek, H. , Evans, G. , Fuller, F. , Gul, S. , Hunter, M.S. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Laksmono, H. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Sierra, R.G. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Waterman, D.G. , Weis, W.I. , Weng, T.-C. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A. , Zwart, P.H.
Primary Citation of Related Structures: 5KAI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 344 | Thermosynechococcus Elongatus (Strain Bp-1) | MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Elongatus (Strain Bp-1) | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus (Strain Bp-1) | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Elongatus (Strain Bp-1) | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II manganese-stabilizing polypeptide | O | 272 | Thermosynechococcus Elongatus (Strain Bp-1) | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRITKK |
| Photosystem II 12 kDa extrinsic protein | U | 134 | Thermosynechococcus Elongatus (Strain Bp-1) | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 163 | Thermosynechococcus Elongatus (Strain Bp-1) | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 46 | Thermosynechococcus Elongatus (Strain Bp-1) | MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 41 | Thermosynechococcus Elongatus (Strain Bp-1) | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 510 | Thermosynechococcus Elongatus (Strain Bp-1) | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV |
| Photosystem II protein Y | R | 41 | Thermosynechococcus Elongatus (Strain Bp-1) | MDWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLLQKAKAA |
| Photosystem II CP43 reaction center protein | C | 461 | Thermosynechococcus Elongatus (Strain Bp-1) | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Elongatus (Strain Bp-1) | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Elongatus (Strain Bp-1) | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Elongatus (Strain Bp-1) | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 63 | Thermosynechococcus Elongatus (Strain Bp-1) | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus (Strain Bp-1) | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-06-01 Deposition Author(s): Adams, P.D. , Afonine, P.V. , Alonso-Mori, R. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Dobbek, H. , Evans, G. , Fuller, F. , Gul, S. , Hunter, M.S. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Laksmono, H. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Sierra, R.G. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Waterman, D.G. , Weis, W.I. , Weng, T.-C. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A. , Zwart, P.H.