PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5K9Q

Crystal structure of multidonor hv1-18-class broadly neutralizing influenza a antibody 16.a.26 in complex with a/hong kong/1-4-ma21-1/1968 (h3n2) hemagglutinin

PDB DOI: 10.2210/pdb5k9q/pdb

Classification: IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110)

Deposited: 2016-06-01
Deposition Author(s): Joyce, M.G. , Kwong, P.D. , Mascola, J.R. , Mcdermott, A.B. , Thomas, P.V. , Wheatley, A.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.503 Å

5k9q
Literature

Crystal structure of multidonor hv1-18-class broadly neutralizing influenza a antibody 16.a.26 in complex with a/hong kong/1-4-ma21-1/1968 (h3n2) hemagglutinin

Joyce, M.G. , Kwong, P.D. , Mascola, J.R. , Mcdermott, A.B. , Thomas, P.V. , Wheatley, A.K.

Primary Citation of Related Structures: 5K9Q


Proteins
Molecule Chains Sequence Length Organism Sequence
Hemagglutinin HA1 A 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA1 C 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA1 E 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA1 M 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA1 O 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA1 Q 320 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKA
Hemagglutinin HA2 B 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
Hemagglutinin HA2 D 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
Hemagglutinin HA2 F 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
Hemagglutinin HA2 N 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
Hemagglutinin HA2 P 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
Hemagglutinin HA2 R 170 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) FGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ
16.a.26 Heavy chain G 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Heavy chain H 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Heavy chain J 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Heavy chain S 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Heavy chain U 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Heavy chain X 231 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) QVQLVQSGPEVKKPGASVKVSCKASGYSFSRYGISWVRQAPGQGLEWLGWISGYTGNTNYAQKFQGRVTMTTDTSTSTASMELRSLRSDDTAVYYCARDKKQGEVVLPAASFRWFAPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
16.a.26 Light chain I 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
16.a.26 Light chain K 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
16.a.26 Light chain L 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
16.a.26 Light chain T 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
16.a.26 Light chain V 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
16.a.26 Light chain Y 214 Salmonella Enterica , Streptomyces Hygroscopicus Subsp. Limoneus , Actinoplanes Sp. (Strain Atcc 31044 / Cbs 674.73 / Se50/110) DIQMTQSPVSLSASVGDRVTITCRASQSIGKFLNWYQQKPGRAPKLLIYYASNLETGGPSRFSGRGSETEFSLTISSLQPEDFATYYCQQSNNVPHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-06-01
Deposition Author(s): Joyce, M.G. , Kwong, P.D. , Mascola, J.R. , Mcdermott, A.B. , Thomas, P.V. , Wheatley, A.K.