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FASTA Sequence PDB Format mmCIF Format
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5K0Y

M48s late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eif2 ternary complex and eif3 i and g subunits relocated to the intersubunit face

PDB DOI: 10.2210/pdb5k0y/pdb

Classification: TRANSLATION
Organism(s): Salmonella Enterica , Halomicronema Hongdechloris

Deposited: 2016-05-17
Deposition Author(s): Brito Querido, J. , Hashem, Y. , Kuhn, L. , Mancera-Martinez, E. , Myasnikov, A.G. , Renaud, A. , Simonetti, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.8 Å

Literature

M48s late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eif2 ternary complex and eif3 i and g subunits relocated to the intersubunit face

Brito Querido, J. , Hashem, Y. , Kuhn, L. , Mancera-Martinez, E. , Myasnikov, A.G. , Renaud, A. , Simonetti, A.

Primary Citation of Related Structures: 5K0Y


Proteins
Molecule Chains Sequence Length Organism Sequence
ribosomal protein uS19 N 127 Salmonella Enterica , Halomicronema Hongdechloris VEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLSRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGR
ribosomal protein eS28 L 64 Salmonella Enterica , Halomicronema Hongdechloris RVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRL
ribosomal protein RACK1 M 313 Salmonella Enterica , Halomicronema Hongdechloris TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI
40S ribosomal protein S8 O 206 Salmonella Enterica , Halomicronema Hongdechloris GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVGVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKG
40S ribosomal protein S6 Q 237 Salmonella Enterica , Halomicronema Hongdechloris MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSL
40S ribosomal protein S12 R 124 Salmonella Enterica , Halomicronema Hongdechloris GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
40S ribosomal protein S24 S 131 Salmonella Enterica , Halomicronema Hongdechloris DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIQEKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKPKE
ribosomal protein eS10 T 98 Salmonella Enterica , Halomicronema Hongdechloris MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR
ribosomal protein uS7 U 191 Salmonella Enterica , Halomicronema Hongdechloris TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
ribosomal protein eS30 V 59 Salmonella Enterica , Halomicronema Hongdechloris KVHGSLARVGKVRGQTLKVAKQEKKKKRTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS
ribosomal protein eS25 W 75 Salmonella Enterica , Halomicronema Hongdechloris RDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKG
ribosomal protein uS8 A 129 Salmonella Enterica , Halomicronema Hongdechloris VRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
ribosomal protein eS7 X 190 Salmonella Enterica , Halomicronema Hongdechloris SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL
40S ribosomal protein S27 Y 84 Salmonella Enterica , Halomicronema Hongdechloris MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH
ribosomal protein uS15 Z 150 Salmonella Enterica , Halomicronema Hongdechloris GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA
40S ribosomal protein S21 B 82 Salmonella Enterica , Halomicronema Hongdechloris MQSNAGEFVDLYVPRKCSASNRIIGAKDHASIPMNVAEVDKVTGRFNGQSKTYAICGAIRRMGESDDSILRLAKSHGIVSQN
ribosomal protein uS5 C 226 Salmonella Enterica , Halomicronema Hongdechloris GKAGDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGAALKDKVLKIMPVQKQTQAGQRTRFKAFVAIGDYNGHVGLGMKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVRCKVTGRCGSVLVRLIPAPRGTGIISAPVPKKLLLMAGIDDCYTSAGGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT
eukaryotic initiation factor 2 subunit Beta (eIF2-Beta) D 17 Salmonella Enterica , Halomicronema Hongdechloris SEKEYVEMLDRLYSKLP
ribosomal protein eS17 E 126 Salmonella Enterica , Halomicronema Hongdechloris MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGM
ribosomal protein uS17 G 158 Salmonella Enterica , Halomicronema Hongdechloris MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
ribosomal protein uS9 H 141 Salmonella Enterica , Halomicronema Hongdechloris PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
40S ribosomal protein S4 I 263 Salmonella Enterica , Halomicronema Hongdechloris MARGPKKHLKRVAAPKHWMLDKLTSVFAPRPSTGPHKLRECLPLIIFLRNKLKYALTGDEVKKICMQRFIKIDGKVRADITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
ribosomal protein uS14 J 53 Salmonella Enterica , Halomicronema Hongdechloris QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Ribosomal protein S9 (Predicted) K 182 Salmonella Enterica , Halomicronema Hongdechloris WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAG
Eukaryotic translation initiation factor 2 subunit 1 P 266 Salmonella Enterica , Halomicronema Hongdechloris CRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
mRNA f 30 NA CAGACACCAUGGUGCACCUGACUCCUGAGG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2016-05-17
Deposition Author(s): Brito Querido, J. , Hashem, Y. , Kuhn, L. , Mancera-Martinez, E. , Myasnikov, A.G. , Renaud, A. , Simonetti, A.