PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5JDB

Binding specificity of p[8] vp8* proteins of rotavirus vaccine strains with histo-blood group antigens

PDB DOI: 10.2210/pdb5jdb/pdb

Classification: VIRAL PROTEIN
Organism(s): Rotavirus A

Deposited: 2016-04-16
Deposition Author(s): Cao, Y. , Duan, Z. , Guo, N. , Jin, M. , Li, D. , Pang, L. , Sun, X. , Xie, G. , Zhang, Q. , Zhou, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.901 Å

Literature

Binding specificity of p[8] vp8* proteins of rotavirus vaccine strains with histo-blood group antigens

Cao, Y. , Duan, Z. , Guo, N. , Jin, M. , Li, D. , Pang, L. , Sun, X. , Xie, G. , Zhang, Q. , Zhou, Y.

Primary Citation of Related Structures: 5JDB


Proteins
Molecule Chains Sequence Length Organism Sequence
Outer capsid protein VP4 A 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Outer capsid protein VP4 B 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Outer capsid protein VP4 C 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Outer capsid protein VP4 D 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Outer capsid protein VP4 E 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Outer capsid protein VP4 F 160 Rotavirus A ILDGPYQPTTFTPPIDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTVFGENKQFNVRNDSDKWKFLEMFRSSSQNEFYNRRTLTSDTKLVGILKYGGRIWTFHGETPRATTDSSNTANLNDISIIIHSEFYIIPRSQESKCNEYINNGL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-04-16
Deposition Author(s): Cao, Y. , Duan, Z. , Guo, N. , Jin, M. , Li, D. , Pang, L. , Sun, X. , Xie, G. , Zhang, Q. , Zhou, Y.