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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5J0N

Lambda excision hj intermediate

PDB DOI: 10.2210/pdb5j0n/pdb

Classification: TRANSFERASE, HYDROLASE/DNA
Organism(s): Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct

Deposited: 2016-03-28
Deposition Author(s): Grigorieff, N. , Landy, A. , Van Duyne, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 11.0 Å

5j0n
Literature

Lambda excision hj intermediate

Grigorieff, N. , Landy, A. , Van Duyne, G.

Primary Citation of Related Structures: 5J0N


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
attP(-117 to +79) a 197 NA GTCGGCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTAATACAATAAGTTGGAATTCTAAAAAAGCATTGCTTATCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATATTGAT
attB(-21) to attP(+117) b 139 NA CCGTTTCGCTCAAGTTAGTATATTAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGCCGAC
attB(-19 to +21) c 41 NA CCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGG
attP(-79) to attB(+19) d 99 NA ATCAATATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATAAGCAATGCTTTTTTAGAATTCCAACTTATTGTAAAAAAGCAGGCTTCAACGG

Proteins
Molecule Chains Sequence Length Organism Sequence
Integrase E 356 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
Integrase F 356 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
Integrase G 356 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
Integrase H 356 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
Integration host factor subunit alpha I 96 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK
Integration host factor subunit alpha K 96 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK
Integration host factor subunit beta J 94 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
Integration host factor subunit beta L 94 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
Excisionase M 55 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP
Excisionase N 55 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP
Excisionase O 55 Enterobacteria Phage Lambda , Escherichia Coli , Synthetic Construct MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2016-03-28
Deposition Author(s): Grigorieff, N. , Landy, A. , Van Duyne, G.