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5IMR
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
PDB DOI: 10.2210/pdb5imr/pdb
Classification: RIBOSOME Organism(s): Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct
Deposited: 2016-03-06 Deposition Author(s): Ahmed, T. , Bhushan, S. , Ero, R. , Gao, Y.G. , Jian, G.K. , Kumar, V. , Zhan, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.7 Å
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Ahmed, T. , Bhushan, S. , Ero, R. , Gao, Y.G. , Jian, G.K. , Kumar, V. , Zhan, Y.
Primary Citation of Related Structures: 5IMR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L2 | A | 276 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK |
| 50S ribosomal protein L21 | N | 101 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG |
| 50S ribosomal protein L22 | O | 113 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGEKHGK |
| 50S ribosomal protein L23 | P | 96 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKTAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQKIEALEGLI |
| 50S ribosomal protein L24 | Q | 110 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEE |
| 50S ribosomal protein L25 | R | 206 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEAAAEVAEPEVIKKGKEEEEE |
| 50S ribosomal protein L27 | S | 85 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPLA |
| 50S ribosomal protein L29 | T | 67 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQNA |
| 50S ribosomal protein L30 | U | 60 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE |
| 50S ribosomal protein L31 | V | 71 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDSYRKGR |
| 50S ribosomal protein L32 | W | 60 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAKHPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV |
| 50S ribosomal protein L13 | F | 140 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKTYVPKQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV |
| 50S ribosomal protein L33 | X | 54 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI |
| 50S ribosomal protein L34 | Y | 49 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRKR |
| 50S ribosomal protein L4 | C | 210 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKEVAVYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIGGEA |
| 50S ribosomal protein L5 | D | 182 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK |
| 50S ribosomal protein L6 | E | 180 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAKK |
| 50S ribosomal protein L35 | Z | 65 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE |
| 50S ribosomal protein L3 | B | 206 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETKKAAK |
| 50S ribosomal protein L14 | G | 122 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL |
| 30S ribosomal protein S4 | H | 209 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR |
| 30S ribosomal protein S5 | I | 162 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQG |
| 30S ribosomal protein S6 | J | 101 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA |
| 30S ribosomal protein S7 | K | 156 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW |
| 30S ribosomal protein S8 | L | 138 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW |
| 30S ribosomal protein S9 | M | 128 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR |
| 50S ribosomal protein L36 | 1 | 37 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG |
| 50S ribosomal protein L10 | 2 | 173 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPELDGLQGPSAVVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARELVGILEAYAEKKAA |
| 50S ribosomal protein L11 | 3 | 147 | Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEVKDA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-03-06 Deposition Author(s): Ahmed, T. , Bhushan, S. , Ero, R. , Gao, Y.G. , Jian, G.K. , Kumar, V. , Zhan, Y.