5IM4
Crystal structure of designed two-component self-assembling icosahedral cage i52-32
PDB DOI: 10.2210/pdb5im4/pdb
Classification: PROTEIN BINDING Organism(s): Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005
Deposited: 2016-03-05 Deposition Author(s): Baker, D. , Bale, J.B. , Cascio, D. , Collazo, M.J. , King, N.P. , Liu, Y.A. , Sawaya, M.R. , Sheffler, W. , Thomas, C. , Yeates, T.O.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.5 Å
Crystal structure of designed two-component self-assembling icosahedral cage i52-32
Baker, D. , Bale, J.B. , Cascio, D. , Collazo, M.J. , King, N.P. , Liu, Y.A. , Sawaya, M.R. , Sheffler, W. , Thomas, C. , Yeates, T.O.
Primary Citation of Related Structures: 5IM4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Phosphotransferase system, mannose/fructose-specific component IIA | A | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| 6,7-dimethyl-8-ribityllumazine synthase | E | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| Phosphotransferase system, mannose/fructose-specific component IIA | C | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | B | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | D | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | K | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | L | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | N | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | M | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| 6,7-dimethyl-8-ribityllumazine synthase | O | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| 6,7-dimethyl-8-ribityllumazine synthase | U | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| 6,7-dimethyl-8-ribityllumazine synthase | V | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| 6,7-dimethyl-8-ribityllumazine synthase | X | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| 6,7-dimethyl-8-ribityllumazine synthase | W | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| 6,7-dimethyl-8-ribityllumazine synthase | Y | 162 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MKYDGSKLRIGILHARWNLEIIAALVAGAIKRLQEFGVKAENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFNLEHHHHHH |
| Phosphotransferase system, mannose/fructose-specific component IIA | F | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | H | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | G | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | I | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | J | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | P | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | Q | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | S | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | R | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | T | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
| Phosphotransferase system, mannose/fructose-specific component IIA | Z | 138 | Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Candida Albicans P37005 | MGMKEKFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEKVAKEVMRIIIAKLAEDKEIIIVVDLFGGSPFNIALEMMKTFDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVIEKSSLKM |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-03-05 Deposition Author(s): Baker, D. , Bale, J.B. , Cascio, D. , Collazo, M.J. , King, N.P. , Liu, Y.A. , Sawaya, M.R. , Sheffler, W. , Thomas, C. , Yeates, T.O.