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FASTA Sequence PDB Format mmCIF Format
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5I4A

X-ray crystal structure of marinitoga piezophila argonaute in complex with 5' oh guide rna

PDB DOI: 10.2210/pdb5i4a/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Marinitoga Piezophila (Strain Dsm 14283 / Jcm 11233 / Ka3) , Synthetic Construct

Deposited: 2016-02-11
Deposition Author(s): Doudna, J.A. , Doxzen, K.W. , Kaya, E. , Knoll, K.R. , Kranzusch, P.J. , Strutt, S.C. , Wilson, R.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.949 Å

5i4a
Literature

X-ray crystal structure of marinitoga piezophila argonaute in complex with 5' oh guide rna

Doudna, J.A. , Doxzen, K.W. , Kaya, E. , Knoll, K.R. , Kranzusch, P.J. , Strutt, S.C. , Wilson, R.C.

Primary Citation of Related Structures: 5I4A


Proteins
Molecule Chains Sequence Length Organism Sequence
Argonaute protein A 642 Marinitoga Piezophila (Strain Dsm 14283 / Jcm 11233 / Ka3) , Synthetic Construct GANAYLNLYKIDIPKKIKRLYFYNPDMEPKLFARNLSRVNNFKFQDSNDLVWIEIPDIDFQITPKNVFQYKVEKEEIIKEEEDKKLFVKTLYKYIKKLFLDNDFYFKKGNNFISNSEVFSLDSNENVNAHLTYKIKIHNISNEYYLSILPKFTFLSKEPALESAIKSGYLYNIKSGKSFPYISGLDGILKIDIGNNQIVEVAYPENYLFNFTTRDAEKYGFSKEVHEIYKNKVFEGFKKIPKTLGFLNKITNLNENYQLKDGYKIFINVIYKFKNGESRYAKDVFKYSFYKNEQPLKAIFFFSSKKQFFEVQKSLKELFHNKHSVFYRAAAELGFSKVEFLRDSKTKSSAFLYNPEEFTVKNTEFINQIEDNVMAIVLLDKYIGNIDPLVRNFPDNLILQPILKEKLEDIKPFIIKSYVYKMGNFIPECKPFILKKMEDKEKNLYIGIDLSHDTYARKTNLCIAAVDNTGDILYIGKHKNLELNEKMNLDILEKEYIKAFEKYIEKFNVSPENVFILRDGRFIEDIEIIKNFISYNDTKYTLVEVNKNTNINSYDDLKEWIIKLDENTYIYYPKTFLNQKGVEVKILENNTDYTIEEIIEQIYLLTRVAHSTPYTNYKLPYPLHIANKVALTDYEWKLYIPY
Argonaute protein C 642 Marinitoga Piezophila (Strain Dsm 14283 / Jcm 11233 / Ka3) , Synthetic Construct GANAYLNLYKIDIPKKIKRLYFYNPDMEPKLFARNLSRVNNFKFQDSNDLVWIEIPDIDFQITPKNVFQYKVEKEEIIKEEEDKKLFVKTLYKYIKKLFLDNDFYFKKGNNFISNSEVFSLDSNENVNAHLTYKIKIHNISNEYYLSILPKFTFLSKEPALESAIKSGYLYNIKSGKSFPYISGLDGILKIDIGNNQIVEVAYPENYLFNFTTRDAEKYGFSKEVHEIYKNKVFEGFKKIPKTLGFLNKITNLNENYQLKDGYKIFINVIYKFKNGESRYAKDVFKYSFYKNEQPLKAIFFFSSKKQFFEVQKSLKELFHNKHSVFYRAAAELGFSKVEFLRDSKTKSSAFLYNPEEFTVKNTEFINQIEDNVMAIVLLDKYIGNIDPLVRNFPDNLILQPILKEKLEDIKPFIIKSYVYKMGNFIPECKPFILKKMEDKEKNLYIGIDLSHDTYARKTNLCIAAVDNTGDILYIGKHKNLELNEKMNLDILEKEYIKAFEKYIEKFNVSPENVFILRDGRFIEDIEIIKNFISYNDTKYTLVEVNKNTNINSYDDLKEWIIKLDENTYIYYPKTFLNQKGVEVKILENNTDYTIEEIIEQIYLLTRVAHSTPYTNYKLPYPLHIANKVALTDYEWKLYIPY

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*U)-3') b 21 NA UAUACAACCUACUACCUCAUU
RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*U)-3') d 21 NA UAUACAACCUACUACCUCAUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-02-11
Deposition Author(s): Doudna, J.A. , Doxzen, K.W. , Kaya, E. , Knoll, K.R. , Kranzusch, P.J. , Strutt, S.C. , Wilson, R.C.