PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5HQ2

Structural model of set8 histone h4 lys20 methyltransferase bound to nucleosome core particle

PDB DOI: 10.2210/pdb5hq2/pdb

Classification: Transferase/DNA
Organism(s): Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603

Deposited: 2016-01-21
Deposition Author(s): Mcginty, R.K. , Tan, S. , Tavarekere, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.5 Å

Literature

Structural model of set8 histone h4 lys20 methyltransferase bound to nucleosome core particle

Mcginty, R.K. , Tan, S. , Tavarekere, G.

Primary Citation of Related Structures: 5HQ2


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 135 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A G 129 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 H 122 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Guanine nucleotide exchange factor SRM1 K 483 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 GSVKRTVATNGDASGAHRAKKMSKTHASHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDD
N-lysine methyltransferase SETD8 M 202 Salmonella Enterica , Pseudomonas Chlororaphis Subsp. Piscium , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 GSAKQALKKPIKGKQAPRKKAQGKTQQNRKLTDFYPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAFPWLKH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (149-MER) i 149 NA ATCGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGAT
DNA (149-MER) j 149 NA ATCAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCGAT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-01-21
Deposition Author(s): Mcginty, R.K. , Tan, S. , Tavarekere, G.