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5HLK

Crystal structure of the ternary ecorv-dna-lu complex with cleaved dna substrate.

PDB DOI: 10.2210/pdb5hlk/pdb

Classification: HYDROLASE/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2016-01-15
Deposition Author(s): Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

Literature

Crystal structure of the ternary ecorv-dna-lu complex with cleaved dna substrate.

Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.

Primary Citation of Related Structures: 5HLK


Proteins
Molecule Chains Sequence Length Organism Sequence
Type-2 restriction enzyme EcoRV A 244 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
Type-2 restriction enzyme EcoRV B 244 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*AP*AP*GP*AP*TP)-3') c 6 NA AAAGAT
DNA (5'-D(*AP*AP*AP*GP*AP*TP)-3') d 6 NA AAAGAT
DNA (5'-D(*AP*TP*CP*TP*TP*TP)-3') e 6 NA ATCTTT
DNA (5'-D(*AP*TP*CP*TP*TP*TP)-3') f 6 NA ATCTTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-01-15
Deposition Author(s): Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.