5H2F
Crystal structure of the psbm-deletion mutant of photosystem ii
PDB DOI: 10.2210/pdb5h2f/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2016-10-15 Deposition Author(s): Ikeuchi, M. , Iwai, M. , Kamiya, N. , Kawakami, K. , Shen, J.R. , Umena, Y. , Uto, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Crystal structure of the psbm-deletion mutant of photosystem ii
Ikeuchi, M. , Iwai, M. , Kamiya, N. , Kawakami, K. , Shen, J.R. , Umena, Y. , Uto, S.
Primary Citation of Related Structures: 5H2F
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 334 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 35 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | PNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II manganese-stabilizing polypeptide | O | 243 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 30 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 29 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | VIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 37 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQ |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 505 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRR |
| Photosystem II CP43 reaction center protein | C | 455 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | NSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 342 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 80 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | TGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 33 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | YPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 63 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA |
| Photosystem II reaction center protein I | I | 36 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKD |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-10-15 Deposition Author(s): Ikeuchi, M. , Iwai, M. , Kamiya, N. , Kawakami, K. , Shen, J.R. , Umena, Y. , Uto, S.