5GKR
Crystal structure of sle patient-derived anti-dna antibody in complex with oligonucleotide
PDB DOI: 10.2210/pdb5gkr/pdb
Classification: IMMUNE SYSTEM/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2016-07-05 Deposition Author(s): Arimori, T. , Kikutani, H. , Sakakibara, S. , Takagi, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.1 Å
Crystal structure of sle patient-derived anti-dna antibody in complex with oligonucleotide
Arimori, T. , Kikutani, H. , Sakakibara, S. , Takagi, J.
Primary Citation of Related Structures: 5GKR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| IgG2, Fab (heavy chain) | A | 218 | Homo Sapiens , Synthetic Construct | QVQLQESGPGLVKSSETLSLTCTVSGGSISSYFWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISLHTSKNQFSLKLSSVTAADTAVYYCARHRNWLFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVDHKPSNTKVDKTVERKC |
| IgG2, Fab (heavy chain) | C | 218 | Homo Sapiens , Synthetic Construct | QVQLQESGPGLVKSSETLSLTCTVSGGSISSYFWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISLHTSKNQFSLKLSSVTAADTAVYYCARHRNWLFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVDHKPSNTKVDKTVERKC |
| lambda, Fab (light chain) | B | 216 | Homo Sapiens , Synthetic Construct | QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKVMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSYTYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| lambda, Fab (light chain) | D | 216 | Homo Sapiens , Synthetic Construct | QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKVMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSYTYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*TP*TP*TP*T)-3') | t | 4 | NA | TTTT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-07-05 Deposition Author(s): Arimori, T. , Kikutani, H. , Sakakibara, S. , Takagi, J.