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5GKF

Structure of endoms-dsdna1' complex

PDB DOI: 10.2210/pdb5gkf/pdb

Classification: HYDROLASE/DNA
Organism(s): Thermococcus Kodakarensis Kod1 , Synthetic Construct

Deposited: 2016-07-04
Deposition Author(s): Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

5gkf
Literature

Structure of endoms-dsdna1' complex

Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.

Primary Citation of Related Structures: 5GKF


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease EndoMS A 252 Thermococcus Kodakarensis Kod1 , Synthetic Construct MSKDKVTVITSPSTEELVSLVNSALLEEAMLTIFARCKVHYDGRAKSELGSGDRVIIVKPDGSFLIHQSKKREPVNWQPPGSRVRLELRENPVLVSIRRKPRETLEVELEEVYMVSVFRAEDYEELALTGSEAEMAELIFENPEVIEPGFKPLFREKAIGTGIVAVLGRDSDGNIVVLELKRRRAELHAVRQLKSYVEILREEYGDKVRGILVAPSLTSGAKRLLEKEGLEFRKLEPPKRDSKKKGRQKTLF
Endonuclease EndoMS B 252 Thermococcus Kodakarensis Kod1 , Synthetic Construct MSKDKVTVITSPSTEELVSLVNSALLEEAMLTIFARCKVHYDGRAKSELGSGDRVIIVKPDGSFLIHQSKKREPVNWQPPGSRVRLELRENPVLVSIRRKPRETLEVELEEVYMVSVFRAEDYEELALTGSEAEMAELIFENPEVIEPGFKPLFREKAIGTGIVAVLGRDSDGNIVVLELKRRRAELHAVRQLKSYVEILREEYGDKVRGILVAPSLTSGAKRLLEKEGLEFRKLEPPKRDSKKKGRQKTLF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*CP*TP*AP*CP*AP*TP*GP*TP*CP*GP*TP*CP*C)-3') c 15 NA CGCTACATGTCGTCC
DNA (5'-D(*GP*GP*AP*CP*GP*AP*CP*TP*TP*GP*TP*AP*GP*CP*G)-3') d 15 NA GGACGACTTGTAGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-07-04
Deposition Author(s): Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.