Crystal structure of box c/d rnp with 13 nt guide regions and 11 nt substrates
PDB DOI: 10.2210/pdb5gip/pdb
Classification: TRANSFERASE/RNA Organism(s): Sulfolobus Solfataricus , Synthetic Construct
Deposited: 2016-06-24 Deposition Author(s): Lin, J. , Yang, Z. , Ye, K.
Proteins | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit | A | 388 | Sulfolobus Solfataricus , Synthetic Construct | MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH |
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit | B | 388 | Sulfolobus Solfataricus , Synthetic Construct | MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH |
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit | K | 388 | Sulfolobus Solfataricus , Synthetic Construct | MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH |
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit | L | 388 | Sulfolobus Solfataricus , Synthetic Construct | MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH |
50S ribosomal protein L7Ae | C | 130 | Sulfolobus Solfataricus , Synthetic Construct | MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS |
50S ribosomal protein L7Ae | D | 130 | Sulfolobus Solfataricus , Synthetic Construct | MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS |
50S ribosomal protein L7Ae | M | 130 | Sulfolobus Solfataricus , Synthetic Construct | MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS |
50S ribosomal protein L7Ae | N | 130 | Sulfolobus Solfataricus , Synthetic Construct | MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS |
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase | E | 232 | Sulfolobus Solfataricus , Synthetic Construct | MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG |
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase | F | 232 | Sulfolobus Solfataricus , Synthetic Construct | MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG |
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase | O | 232 | Sulfolobus Solfataricus , Synthetic Construct | MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG |
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase | P | 232 | Sulfolobus Solfataricus , Synthetic Construct | MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG |
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
C/D RNA | g | 41 | NA | GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC |
C/D RNA | h | 41 | NA | GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC |
C/D RNA | q | 41 | NA | GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC |
C/D RNA | r | 41 | NA | GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC |
substrate | i | 11 | NA | CCAUGAGUGUU |
substrate | j | 11 | NA | CCAUGAGUGUU |
substrate | s | 11 | NA | CCAUGAGUGUU |
substrate | t | 11 | NA | CCAUGAGUGUU |
Method: X-RAY DIFFRACTION