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FASTA Sequence PDB Format mmCIF Format
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5GIP

Crystal structure of box c/d rnp with 13 nt guide regions and 11 nt substrates

PDB DOI: 10.2210/pdb5gip/pdb

Classification: TRANSFERASE/RNA
Organism(s): Sulfolobus Solfataricus , Synthetic Construct

Deposited: 2016-06-24
Deposition Author(s): Lin, J. , Yang, Z. , Ye, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.129 Å

5gip
Literature

Crystal structure of box c/d rnp with 13 nt guide regions and 11 nt substrates

Lin, J. , Yang, Z. , Ye, K.

Primary Citation of Related Structures: 5GIP


Proteins
Molecule Chains Sequence Length Organism Sequence
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit A 388 Sulfolobus Solfataricus , Synthetic Construct MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit B 388 Sulfolobus Solfataricus , Synthetic Construct MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit K 388 Sulfolobus Solfataricus , Synthetic Construct MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit L 388 Sulfolobus Solfataricus , Synthetic Construct MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
50S ribosomal protein L7Ae C 130 Sulfolobus Solfataricus , Synthetic Construct MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
50S ribosomal protein L7Ae D 130 Sulfolobus Solfataricus , Synthetic Construct MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
50S ribosomal protein L7Ae M 130 Sulfolobus Solfataricus , Synthetic Construct MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
50S ribosomal protein L7Ae N 130 Sulfolobus Solfataricus , Synthetic Construct MDAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase E 232 Sulfolobus Solfataricus , Synthetic Construct MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase F 232 Sulfolobus Solfataricus , Synthetic Construct MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase O 232 Sulfolobus Solfataricus , Synthetic Construct MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase P 232 Sulfolobus Solfataricus , Synthetic Construct MAEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
C/D RNA g 41 NA GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC
C/D RNA h 41 NA GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC
C/D RNA q 41 NA GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC
C/D RNA r 41 NA GGGAGUCUUGUGAUGAGAACACUCAUGGUCUGAAGACUCCC
substrate i 11 NA CCAUGAGUGUU
substrate j 11 NA CCAUGAGUGUU
substrate s 11 NA CCAUGAGUGUU
substrate t 11 NA CCAUGAGUGUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-06-24
Deposition Author(s): Lin, J. , Yang, Z. , Ye, K.