5FYJ
Crystal structure at 3.4 a resolution of fully glycosylated hiv-1 clade g x1193.c1 sosip.664 prefusion env trimer in complex with broadly neutralizing antibodies pgt122, 35o22 and vrc01
PDB DOI: 10.2210/pdb5fyj/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2016-03-08 Deposition Author(s): Kwong, P.D. , Stewart-Jones, G.B.E. , Thomas, P.V. , Zhou, T.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.11 Å
Crystal structure at 3.4 a resolution of fully glycosylated hiv-1 clade g x1193.c1 sosip.664 prefusion env trimer in complex with broadly neutralizing antibodies pgt122, 35o22 and vrc01
Kwong, P.D. , Stewart-Jones, G.B.E. , Thomas, P.V. , Zhou, T.
Primary Citation of Related Structures: 5FYJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| GP41 ENV ECTODOMAIN | B | 161 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGMGAVLLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAPEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGRLICCTNVPWNASWSNKSYSEIWDNLTWVEWEREISNYTQHIYNLLQESQNQQEKNEQDLLALDKGGGLVPR |
| 35O22 | D | 243 | Homo Sapiens , Human Immunodeficiency Virus 1 | QGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEVLFQ |
| 35O22 | E | 216 | Homo Sapiens , Human Immunodeficiency Virus 1 | QSVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| GP120 ENV ECTODOMAIN | G | 484 | Homo Sapiens , Human Immunodeficiency Virus 1 | ALAGDLWVTVYYGVPVWEDADTTLFCASDAKAYSTESHNVWATHACVPTDPNPQEIPLKNVTENFNMWKNNMVEQMHEDIISLWDESLKPCVKLTPLCVTLICTNVTSNSTNSTNGVTNNSTVDYREQLKNCSFNITTEIRDKQRKEYALFYRLDIVPINDNEKNDTYRLINCNVSTIKQACPKVTFDPIPIHYCAPAGFAILKCRDKKFNGTGPCKNVSTVQCTHGIKPVISTQLLLNGSLAEGDIMIRSENITDNAKTIIVQLKTAVNITCTRPSNNTRKSIRFGPGQAFYATDEIIGDIRQAHCNISKTEWEDMKRNVSDKLKALFNNKTIIFKSSSGGDLEITTHSFNCRGEFFYCNTSGLFNTSGLFNNNSNDSSGNITLPCKIKQIVRMWQRVGQAMYAPPIAGNITCRSRITGLLLVRDGCKSNETNGTETFRPAGGDMRDNWRSELYKYKVVKIKPLGVAPTRCRRRVVGRRRRRR |
| PGT122 | H | 244 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEVLFQ |
| PGT122 | L | 213 | Homo Sapiens , Human Immunodeficiency Virus 1 | APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS |
| VRC01 | U | 240 | Homo Sapiens , Human Immunodeficiency Virus 1 | EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVGGGGSGGGGSGGGGSQVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYCRPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVGGLVPR |
| VRC01 | V | 240 | Homo Sapiens , Human Immunodeficiency Virus 1 | EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVGGGGSGGGGSGGGGSQVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYCRPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVGGLVPR |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-03-08 Deposition Author(s): Kwong, P.D. , Stewart-Jones, G.B.E. , Thomas, P.V. , Zhou, T.