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5FFJ

Structure of a nuclease-deletion mutant of the type isp restriction-modification enzyme llagi in complex with a dna substrate mimic

PDB DOI: 10.2210/pdb5ffj/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Lactococcus Lactis , Synthetic Construct

Deposited: 2015-12-18
Deposition Author(s): Kulkarni, M. , Nirwan, N. , Saikrishnan, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.84 Å

5ffj
Literature

Structure of a nuclease-deletion mutant of the type isp restriction-modification enzyme llagi in complex with a dna substrate mimic

Kulkarni, M. , Nirwan, N. , Saikrishnan, K.

Primary Citation of Related Structures: 5FFJ


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease and methylase LlaGI A 1406 Lactococcus Lactis , Synthetic Construct MRPENVVVKKPKKLRDYQQTAKENALAHFKENDRGQLIMAPGTGKTFTSLKISEALSKDKNGPFKVLYLVPSIQLLTQTLRGWNNDTELTITSMAVTSDRDASRGTDGTEDIKASDIGYPATTSSKKILQNWHDFESLPKQTDMLVVFSTYQSIEVIGEAQKEGFPEFDFIISDEAHRTTGAHEAAKEASAFSKVHSNNNVKGLKRMYQTATPKIYGESAKKNAKDKSILLSSMDDESKYGEVFFRMGFGQAVSRDILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYKNPIKNSPYDGAPLERAIAFTRTIEESKKVSSQFEEVVNEYISEAIEDESIHLSMRHADGKMNALQKGEILDWLADPNKPADEARIVSNVRFLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTGEKPETILDNNKNYETVWQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSAPEQVNDQDKTIENTPVQTELELEWNKFEGAIFGKIVQKVGDRKYLENWSKDVAKIAERQINWIKNKLSDKKDPISLEFKKFVSSLQHNINDSIDEKQAAEMLSQHLITKPIFEALFSEYSFVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDAGEISLSDITRKFMKELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFESTETEETLDDDYFGTNDERLKRQQEVPITAIIGNPPYSKGQSNENDNNKNIEYPRLFKSIADSYVKNSKTTSVLGMYDSYVLSIRWASNRLNDKGVIGFVSNGSYIDSQSADGLRKSLFKEFNHLYIFNLRGDQRTQGETSRKEGGKIFGSGSRTSIAISILVKDDSDNHEVHYHDIGDYLTRDDKLDILRDKESILNIDWENISPDENNDWINQRDQNYLNYRPLADENGSIFSVKDIGIVTNRDAWVSNFSKINVSDNVQIMIKNYNLEVDRLENIDVKLNDKTVVDYVTNDERKISWSRSLKQRAARREKTQFSHSDIMLAMYRPFTKKYLYRNRFLNENVRKTYQTFPDKNSKNLLINISGQGDKADFATLISEYLSDMHVIGGQARNLPRFTYETDGMFAGRTDNIVSDDEFYYVYGVLHSSAYRKRYANDLKKDLPRIPLLKNKDKYVEIGRKLSDLHLNYENQPIWDGIEVEISQPDYRVKKMKHPKKGVLDTIIYNESITIKNIPERAYEYVVNGRPAIEWIIDQYQVKTDKKSGITDDPNEFSDNPKYILNLLLSVITVSMRTLELIEELPEFEIQE
Endonuclease and methylase LlaGI B 1406 Lactococcus Lactis , Synthetic Construct MRPENVVVKKPKKLRDYQQTAKENALAHFKENDRGQLIMAPGTGKTFTSLKISEALSKDKNGPFKVLYLVPSIQLLTQTLRGWNNDTELTITSMAVTSDRDASRGTDGTEDIKASDIGYPATTSSKKILQNWHDFESLPKQTDMLVVFSTYQSIEVIGEAQKEGFPEFDFIISDEAHRTTGAHEAAKEASAFSKVHSNNNVKGLKRMYQTATPKIYGESAKKNAKDKSILLSSMDDESKYGEVFFRMGFGQAVSRDILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYKNPIKNSPYDGAPLERAIAFTRTIEESKKVSSQFEEVVNEYISEAIEDESIHLSMRHADGKMNALQKGEILDWLADPNKPADEARIVSNVRFLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTGEKPETILDNNKNYETVWQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSAPEQVNDQDKTIENTPVQTELELEWNKFEGAIFGKIVQKVGDRKYLENWSKDVAKIAERQINWIKNKLSDKKDPISLEFKKFVSSLQHNINDSIDEKQAAEMLSQHLITKPIFEALFSEYSFVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDAGEISLSDITRKFMKELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFESTETEETLDDDYFGTNDERLKRQQEVPITAIIGNPPYSKGQSNENDNNKNIEYPRLFKSIADSYVKNSKTTSVLGMYDSYVLSIRWASNRLNDKGVIGFVSNGSYIDSQSADGLRKSLFKEFNHLYIFNLRGDQRTQGETSRKEGGKIFGSGSRTSIAISILVKDDSDNHEVHYHDIGDYLTRDDKLDILRDKESILNIDWENISPDENNDWINQRDQNYLNYRPLADENGSIFSVKDIGIVTNRDAWVSNFSKINVSDNVQIMIKNYNLEVDRLENIDVKLNDKTVVDYVTNDERKISWSRSLKQRAARREKTQFSHSDIMLAMYRPFTKKYLYRNRFLNENVRKTYQTFPDKNSKNLLINISGQGDKADFATLISEYLSDMHVIGGQARNLPRFTYETDGMFAGRTDNIVSDDEFYYVYGVLHSSAYRKRYANDLKKDLPRIPLLKNKDKYVEIGRKLSDLHLNYENQPIWDGIEVEISQPDYRVKKMKHPKKGVLDTIIYNESITIKNIPERAYEYVVNGRPAIEWIIDQYQVKTDKKSGITDDPNEFSDNPKYILNLLLSVITVSMRTLELIEELPEFEIQE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*CP*CP*TP*CP*CP*AP*TP*CP*CP*AP*GP*TP*CP*TP*AP*TP*TP*AP*GP*CP*T)-3') d 23 NA TCCTCCATCCAGTCTATTAGCTA
DNA (5'-D(P*TP*CP*CP*TP*CP*CP*AP*TP*CP*CP*AP*GP*TP*CP*TP*AP*TP*TP*AP*GP*CP*T)-3') e 23 NA TCCTCCATCCAGTCTATTAGCTA
DNA (5'-D(P*TP*AP*GP*CP*TP*AP*AP*TP*AP*GP*AP*CP*TP*GP*GP*AP*TP*GP*GP*AP*GP*G)-3') c 23 NA TTAGCTAATAGACTGGATGGAGG
DNA (5'-D(P*TP*AP*GP*CP*TP*AP*AP*TP*AP*GP*AP*CP*TP*GP*GP*AP*TP*GP*GP*AP*GP*G)-3') f 23 NA TTAGCTAATAGACTGGATGGAGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-12-18
Deposition Author(s): Kulkarni, M. , Nirwan, N. , Saikrishnan, K.