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5F8A

Crystal structure of the ternary ecorv-dna-lu complex with uncleaved dna substrate. lanthanide binding to ecorv-dna complex inhibits cleavage.

PDB DOI: 10.2210/pdb5f8a/pdb

Classification: HYDROLASE/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2015-12-09
Deposition Author(s): Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å

5f8a
Literature

Crystal structure of the ternary ecorv-dna-lu complex with uncleaved dna substrate. lanthanide binding to ecorv-dna complex inhibits cleavage.

Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.

Primary Citation of Related Structures: 5F8A


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*T)-3') c 12 NA AAAGATATCTTT
DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*T)-3') d 12 NA AAAGATATCTTT

Proteins
Molecule Chains Sequence Length Organism Sequence
Type-2 restriction enzyme EcoRV A 244 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
Type-2 restriction enzyme EcoRV B 244 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-12-09
Deposition Author(s): Jen-Jacobson, L. , Kehr, A.D. , Rule, G.S. , Sangani, S.S. , Sinha, K.