5E79
Macromolecular diffractive imaging using imperfect crystals
PDB DOI: 10.2210/pdb5e79/pdb
Classification: PHOTOSYNTHESIS
Organism(s): Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2015-10-12
Deposition Author(s): Aquila, A. , Ayyer, K. , Barty, A. , Basu, S. , Beyerlein, K.R. , Boutet, S. , Chapman, H.N. , Coe, J. , Conrad, C.E. , Dorner, K. , Fromme, P. , Fromme, R. , Galli, L. , Hunter, M.S. , James, D. , Koglin, J.E. , Kupitz, C. , Liang, M. , Mariani, V. , Metz, M. , Nelson, G. , Oberthur, D. , Roy-Chowdhury, S. , Sarrou, I. , Schaffer, A. , Schmidt, M. , Spence, J.C.H. , Weierstall, U. , White, T.A. , Xavier, P.L. , Yang, J.-H. , Yefanov, O. , Zhao, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Macromolecular diffractive imaging using imperfect crystals
Aquila, A. , Ayyer, K. , Barty, A. , Basu, S. , Beyerlein, K.R. , Boutet, S. , Chapman, H.N. , Coe, J. , Conrad, C.E. , Dorner, K. , Fromme, P. , Fromme, R. , Galli, L. , Hunter, M.S. , James, D. , Koglin, J.E. , Kupitz, C. , Liang, M. , Mariani, V. , Metz, M. , Nelson, G. , Oberthur, D. , Roy-Chowdhury, S. , Sarrou, I. , Schaffer, A. , Schmidt, M. , Spence, J.C.H. , Weierstall, U. , White, T.A. , Xavier, P.L. , Yang, J.-H. , Yefanov, O. , Zhao, Y.
Primary Citation of Related Structures: 5E79
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 334 | Thermosynechococcus Elongatus (Strain Bp-1) | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Elongatus (Strain Bp-1) | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus (Strain Bp-1) | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 34 | Thermosynechococcus Elongatus (Strain Bp-1) | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQK |
| Photosystem II manganese-stabilizing polypeptide | O | 243 | Thermosynechococcus Elongatus (Strain Bp-1) | TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 30 | Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Thermosynechococcus Elongatus (Strain Bp-1) | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Thermosynechococcus Elongatus (Strain Bp-1) | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 29 | Thermosynechococcus Elongatus (Strain Bp-1) | VIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 39 | Thermosynechococcus Elongatus (Strain Bp-1) | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 504 | Thermosynechococcus Elongatus (Strain Bp-1) | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTR |
| Photosystem II CP43 reaction center protein | C | 451 | Thermosynechococcus Elongatus (Strain Bp-1) | ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 342 | Thermosynechococcus Elongatus (Strain Bp-1) | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 81 | Thermosynechococcus Elongatus (Strain Bp-1) | TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 34 | Thermosynechococcus Elongatus (Strain Bp-1) | SYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 65 | Thermosynechococcus Elongatus (Strain Bp-1) | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 38 | Thermosynechococcus Elongatus (Strain Bp-1) | SEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2015-10-12
Deposition Author(s): Aquila, A. , Ayyer, K. , Barty, A. , Basu, S. , Beyerlein, K.R. , Boutet, S. , Chapman, H.N. , Coe, J. , Conrad, C.E. , Dorner, K. , Fromme, P. , Fromme, R. , Galli, L. , Hunter, M.S. , James, D. , Koglin, J.E. , Kupitz, C. , Liang, M. , Mariani, V. , Metz, M. , Nelson, G. , Oberthur, D. , Roy-Chowdhury, S. , Sarrou, I. , Schaffer, A. , Schmidt, M. , Spence, J.C.H. , Weierstall, U. , White, T.A. , Xavier, P.L. , Yang, J.-H. , Yefanov, O. , Zhao, Y.