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5DKW

Ternary crystal structure of polymerase lambda with a ga mispair at the primer terminus with ca2+ in the active

PDB DOI: 10.2210/pdb5dkw/pdb

Classification: TRANSFERASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2015-09-04
Deposition Author(s): Liu, M.S. , Tsai, M.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.689 Å

Literature

Ternary crystal structure of polymerase lambda with a ga mispair at the primer terminus with ca2+ in the active

Liu, M.S. , Tsai, M.D.

Primary Citation of Related Structures: 5DKW


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 327 Homo Sapiens , Synthetic Construct ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW
DNA polymerase lambda B 327 Homo Sapiens , Synthetic Construct ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*CP*CP*G)-3') d 4 NA GCCG
DNA (5'-D(P*GP*CP*CP*G)-3') c 4 NA GCCG
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') p 6 NA CAGTAC
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') e 6 NA CAGTAC
DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') t 11 NA CGGCGGTACTG
DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') f 11 NA CGGCGGTACTG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-09-04
Deposition Author(s): Liu, M.S. , Tsai, M.D.