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FASTA Sequence PDB Format mmCIF Format
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5D3G

Structure of hiv-1 reverse transcriptase bound to a novel 38-mer hairpin template-primer dna aptamer

PDB DOI: 10.2210/pdb5d3g/pdb

Classification: TRANSFERASE
Organism(s): Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct

Deposited: 2015-08-06
Deposition Author(s): Arnold, E. , Das, K. , Miller, M.T. , Tuske, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

5d3g
Literature

Structure of hiv-1 reverse transcriptase bound to a novel 38-mer hairpin template-primer dna aptamer

Arnold, E. , Das, K. , Miller, M.T. , Tuske, S.

Primary Citation of Related Structures: 5D3G


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 REVERSE TRANSCRIPTASE P66 subunit A 555 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
HIV-1 REVERSE TRANSCRIPTASE P66 subunit C 555 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
HIV-1 REVERSE TRANSCRIPTASE P51 subunit B 444 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct MAHHHHHHALEVLFQGPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ
HIV-1 REVERSE TRANSCRIPTASE P51 subunit D 444 Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Bh10) , Synthetic Construct MAHHHHHHALEVLFQGPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA aptamer (38-MER) f 38 NA TAATACCCCCCCTTCGGTGCTTTGCACCGAAGGGGGGG
DNA aptamer (38-MER) e 38 NA TAATACCCCCCCTTCGGTGCTTTGCACCGAAGGGGGGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-08-06
Deposition Author(s): Arnold, E. , Das, K. , Miller, M.T. , Tuske, S.