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FASTA Sequence PDB Format mmCIF Format
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5B43

Crystal structure of acidaminococcus sp. cpf1 in complex with crrna and target dna

PDB DOI: 10.2210/pdb5b43/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Acidaminococcus Sp. Bv3L6 , Synthetic Construct

Deposited: 2016-03-30
Deposition Author(s): Hirano, H. , Ishitani, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamano, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

5b43
Literature

Crystal structure of acidaminococcus sp. cpf1 in complex with crrna and target dna

Hirano, H. , Ishitani, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamano, T.

Primary Citation of Related Structures: 5B43


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cpf1 A 1310 Acidaminococcus Sp. Bv3L6 , Synthetic Construct GSHMTQFEGFTNLYQVSKTLRFELIPQGKTLKHIQEQGFIEEDKARNDHYKELKPIIDRIYKTYADQCLQLVQLDWENLSAAIDSYRKEKTEETRNALIEEQATYRNAIHDYFIGRTDNLTDAINKRHAEIYKGLFKAELFNGKVLKQLGTVTTTEHENALLRSFDKFTTYFSGFYENRKNVFSAEDISTAIPHRIVQDNFPKFKENCHIFTRLITAVPSLREHFENVKKAIGIFVSTSIEEVFSFPFYNQLLTQTQIDLYNQLLGGISREAGTEKIKGLNEVLNLAIQKNDETAHIIASLPHRFIPLFKQILSDRNTLSFILEEFKSDEEVIQSFCKYKTLLRNENVLETAEALFNELNSIDLTHIFISHKKLETISSALCDHWDTLRNALYERRISELTGKITKSAKEKVQRSLKHEDINLQEIISAAGKELSEAFKQKTSEILSHAHAALDQPLPTTLKKQEEKEILKSQLDSLLGLYHLLDWFAVDESNEVDPEFSARLTGIKLEMEPSLSFYNKARNYATKKPYSVEKFKLNFQMPTLASGWDVNKEKNNGAILFVKNGLYYLGIMPKQKGRYKALSFEPTEKTSEGFDKMYYDYFPDAAKMIPKCSTQLKAVTAHFQTHTTPILLSNNFIEPLEITKEIYDLNNPEKEPKKFQTAYAKKTGDQKGYREALCKWIDFTRDFLSKYTKTTSIDLSSLRPSSQYKDLGEYYAELNPLLYHISFQRIAEKEIMDAVETGKLYLFQIYNKDFAKGHHGKPNLHTLYWTGLFSPENLAKTSIKLNGQAELFYRPKSRMKRMAHRLGEKMLNKKLKDQKTPIPDTLYQELYDYVNHRLSHDLSDEARALLPNVITKEVSHEIIKDRRFTSDKFFFHVPITLNYQAANSPSKFNQRVNAYLKEHPETPIIGIDRGERNLIYITVIDSTGKILEQRSLNTIQQFDYQKKLDNREKERVAARQAWSVVGTIKDLKQGYLSQVIHEIVDLMIHYQAVVVLENLNFGFKSKRTGIAEKAVYQQFEKMLIDKLNCLVLKDYPAEKVGGVLNPYQLTDQFTSFAKMGTQSGFLFYVPAPYTSKIDPLTGFVDPFVWKTIKNHESRKHFLEGFDFLHYDVKTGDFILHFKMNRNLSFQRGLPGFMPAWDIVFEKNETQFDAKGTPFIAGKRIVPVIENHRFTGRYRDLYPANELIALLEEKGIVFRDGSNILPKLLENDDSHAIDTMVALIRSVLQMRNSNAATGEDYINSPVRDLNGVCFDSRFQNPEWPMDADANGAYHIALKGQLLLNHLKESKDLKLQNGISNQDWLAYIQELRN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (43-MER) b 43 NA AAUUUCUACUCUUGUAGAUGGAAAUUAGGUGCGCUUGGCAACC
DNA (34-MER) c 34 NA GGTTGCCAAGCGCACCTAATTTCCTAAAGGACTG
DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*TP*TP*A)-3') d 10 NA CAGTCCTTTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-03-30
Deposition Author(s): Hirano, H. , Ishitani, R. , Nakane, T. , Nishimasu, H. , Nureki, O. , Yamano, T.