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5B3J

Activation of nmda receptors and the mechanism of inhibition by ifenprodil

PDB DOI: 10.2210/pdb5b3j/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Mus Musculus , Rattus Norvegicus , Xenopus Laevis

Deposited: 2016-03-01
Deposition Author(s): Diaz-Avalos, R. , Furukawa, H. , Grant, T. , Grigorieff, N. , Karakas, E. , Simorowski, N. , Tajima, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Literature

Activation of nmda receptors and the mechanism of inhibition by ifenprodil

Diaz-Avalos, R. , Furukawa, H. , Grant, T. , Grigorieff, N. , Karakas, E. , Simorowski, N. , Tajima, N.

Primary Citation of Related Structures: 5B3J


Proteins
Molecule Chains Sequence Length Organism Sequence
NMDA glutamate receptor subunit A 383 Mus Musculus , Rattus Norvegicus , Xenopus Laevis DPKIVNIGAVLSTKKHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSALRYAPDGIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGSYIIQNDRKIIWPGG
NMDA glutamate receptor subunit B 383 Mus Musculus , Rattus Norvegicus , Xenopus Laevis DPKIVNIGAVLSTKKHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSALRYAPDGIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGSYIIQNDRKIIWPGG
Glutamate receptor ionotropic, NMDA 2B C 364 Mus Musculus , Rattus Norvegicus , Xenopus Laevis SPPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRM
Glutamate receptor ionotropic, NMDA 2B D 364 Mus Musculus , Rattus Norvegicus , Xenopus Laevis SPPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRM
Fab, heavy chain E 224 Mus Musculus , Rattus Norvegicus , Xenopus Laevis EVKLVESGGGLVQPGGSLKLSCAASGITFSSYSMSWVRQTPEKRLEWVAYISNGGSGTYYPDTVKGRFTISRDNAKNSLYLQMSSLRSEDTAMYYCARPSRGGSSYWYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAASTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
Fab, heavy chain H 224 Mus Musculus , Rattus Norvegicus , Xenopus Laevis EVKLVESGGGLVQPGGSLKLSCAASGITFSSYSMSWVRQTPEKRLEWVAYISNGGSGTYYPDTVKGRFTISRDNAKNSLYLQMSSLRSEDTAMYYCARPSRGGSSYWYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAASTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
Fab, light chain F 213 Mus Musculus , Rattus Norvegicus , Xenopus Laevis DIQMTQSPSSLSASLGGKVTITCKASQDINKYIAWYQHKPGKGPRLLIQYTSTLQPDIPSRFTGSGSGRDYSFSISNLEPEDIAIYYCLQYDNLYTFGGGTQLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Fab, light chain L 213 Mus Musculus , Rattus Norvegicus , Xenopus Laevis DIQMTQSPSSLSASLGGKVTITCKASQDINKYIAWYQHKPGKGPRLLIQYTSTLQPDIPSRFTGSGSGRDYSFSISNLEPEDIAIYYCLQYDNLYTFGGGTQLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-03-01
Deposition Author(s): Diaz-Avalos, R. , Furukawa, H. , Grant, T. , Grigorieff, N. , Karakas, E. , Simorowski, N. , Tajima, N.