5AKN
The crystal structure of i-dmoi q42ak120m in complex with its target dna nicked in the non-coding strand b and in the presence of 2mm mn
PDB DOI: 10.2210/pdb5akn/pdb
Classification: HYDROLASE/DNA Organism(s): Desulfurococcus Mobilis , Synthetic Construct
Deposited: 2015-03-04 Deposition Author(s): D'Abramo, M. , Marcaida, M.J. , Marenchino, M. , Molina, R. , Montoya, G. , Prieto, J. , Redondo, P.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.75 Å
The crystal structure of i-dmoi q42ak120m in complex with its target dna nicked in the non-coding strand b and in the presence of 2mm mn
D'Abramo, M. , Marcaida, M.J. , Marenchino, M. , Molina, R. , Montoya, G. , Prieto, J. , Redondo, P.
Primary Citation of Related Structures: 5AKN
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HOMING ENDONUCLEASE I-DMOI | A | 199 | Desulfurococcus Mobilis , Synthetic Construct | AHNNENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPPEAAALEHHHHHH |
| HOMING ENDONUCLEASE I-DMOI | F | 199 | Desulfurococcus Mobilis , Synthetic Construct | AHNNENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPPEAAALEHHHHHH |
| HOMING ENDONUCLEASE I-DMOI | K | 199 | Desulfurococcus Mobilis , Synthetic Construct | AHNNENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPPEAAALEHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3' | b | 14 | NA | GCCTTGCCGGGTAA |
| 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3' | g | 14 | NA | GCCTTGCCGGGTAA |
| 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3 | c | 11 | NA | GTTCCGGCGCG |
| D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3' | d | 15 | NA | CGCGCCGGAACTTAC |
| 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3' | e | 10 | NA | CCGGCAAGGC |
| 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3' | j | 10 | NA | CCGGCAAGGC |
| 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3' | o | 10 | NA | CCGGCAAGGC |
| 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP*CP*GP*CP *GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3' | h | 26 | NA | GTTCCGGCGCGCGCGCCGGAACTTAC |
| 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP*CP*GP*CP *GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3' | m | 26 | NA | GTTCCGGCGCGCGCGCCGGAACTTAC |
| 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP *CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*C)-3' | l | 29 | NA | GCCTTGCCGGGTAACGCGCCGGAACTTAC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2015-03-04 Deposition Author(s): D'Abramo, M. , Marcaida, M.J. , Marenchino, M. , Molina, R. , Montoya, G. , Prieto, J. , Redondo, P.