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FASTA Sequence PDB Format mmCIF Format
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4ZUX

Saga dub module ubp8/sgf11/sus1/sgf73 bound to ubiqitinated nucleosome

PDB DOI: 10.2210/pdb4zux/pdb

Classification: Hydrolase/DNA
Organism(s): Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis

Deposited: 2015-05-17
Deposition Author(s): Morgan, M. , Wolberger, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.82 Å

4zux
Literature

Saga dub module ubp8/sgf11/sus1/sgf73 bound to ubiqitinated nucleosome

Morgan, M. , Wolberger, C.

Primary Citation of Related Structures: 4ZUX


Proteins
Molecule Chains Sequence Length Organism Sequence
Transcription and mRNA export factor SUS1 A 96 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTMDTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
Ubiquitin carboxyl-terminal hydrolase 8 E 472 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis AMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTAFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN
Transcription and mRNA export factor SUS1 K 96 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTMDTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
Histone H3.2 O 136 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Polyubiquitin-B X 76 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Histone H2A type 1 C 130 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 H 123 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2A type 1 M 130 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
SAGA-associated factor 73 Y 104 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MRSGDAEIKGIKPKVIEEYSLSQGSGPSNDSWKSLMSSAKDTPLQYDHMNRESLKKYFNPNAQLIEDPLDKPIQYRVCEKCGKPLALTAIVDHLENHCAGASGK
Histone H2B 1.1 D 123 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 N 123 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
SAGA-associated factor 11 B 99 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTEETITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR
Transcription and mRNA export factor SUS1 F 96 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTMDTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
SAGA-associated factor 11 L 99 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTEETITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR
Histone H4 P 103 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
SAGA-associated factor 11 G 99 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTEETITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR
Histone H2A type 1 Q 130 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 R 123 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Ubiquitin carboxyl-terminal hydrolase 8 J 472 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis AMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTAFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN
Ubiquitin carboxyl-terminal hydrolase 8 U 472 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis AMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTAFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN
Ubiquitin carboxyl-terminal hydrolase 8 Z 472 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis AMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTAFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN
Transcription and mRNA export factor SUS1 V 96 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTMDTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
SAGA-associated factor 11 W 99 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Yjm789) , Synthetic Construct , Xenopus Laevis MTEETITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) s 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) t 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-05-17
Deposition Author(s): Morgan, M. , Wolberger, C.