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4ZPT

Structure of mers-coronavirus spike receptor-binding domain (england1 strain) in complex with vaccine-elicited murine neutralizing antibody d12 (crystal form 1)

PDB DOI: 10.2210/pdb4zpt/pdb

Classification: Viral protein/Immune system
Organism(s): Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus

Deposited: 2015-05-08
Deposition Author(s): Graham, B.S. , Joyce, M.G. , Kwong, P.D. , Mascola, J.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.591 Å

4zpt
Literature

Structure of mers-coronavirus spike receptor-binding domain (england1 strain) in complex with vaccine-elicited murine neutralizing antibody d12 (crystal form 1)

Graham, B.S. , Joyce, M.G. , Kwong, P.D. , Mascola, J.R.

Primary Citation of Related Structures: 4ZPT


Proteins
Molecule Chains Sequence Length Organism Sequence
D12 Fab Heavy chain A 216 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus EVKLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAENTLYLQMSSLRSEDTAMYYCVRDGNSMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
D12 Fab Heavy chain H 216 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus EVKLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAENTLYLQMSSLRSEDTAMYYCVRDGNSMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
D12 Fab Light chain B 214 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus DIQMTQTTSSLSASLGDRVTIICRASQDINNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGSDYSLTISNLEQEDIATYFCQQANTLPPTFGAGTKLELRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
D12 Fab Light chain L 214 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus DIQMTQTTSSLSASLGDRVTIICRASQDINNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGSDYSLTISNLEQEDIATYFCQQANTLPPTFGAGTKLELRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Spike glycoprotein R 208 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus VECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKL
Spike glycoprotein S 208 Human Coronavirus Emc (Isolate United Kingdom/H123990006/2012) , Mus Musculus VECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-05-08
Deposition Author(s): Graham, B.S. , Joyce, M.G. , Kwong, P.D. , Mascola, J.R.