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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4YUU

Crystal structure of oxygen-evolving photosystem ii from a red alga

PDB DOI: 10.2210/pdb4yuu/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Cyanidium Caldarium

Deposited: 2015-03-19
Deposition Author(s): Ago, H. , Shen, J.-R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.77 Å

4yuu
Literature

Crystal structure of oxygen-evolving photosystem ii from a red alga

Ago, H. , Shen, J.-R.

Primary Citation of Related Structures: 4YUU


Proteins
Molecule Chains Sequence Length Organism Sequence
Photosystem II protein D1 A1 344 Cyanidium Caldarium MTVTLERRESTSLWERFCSWITSTENRLYIGWFGVLMIPCLLTATTVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPTSNAIGLHLYPIWEAASLDEWLYNGGPYQLVVLHFLLGVAAYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGALFSAMHGSLVTSSLIRETTENESPNYGYKLGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWLTSIGISTMAFNLNGLNFNQSIVDSQGRVINTWADIINRANLGIEVMHERNAHNFPLDLA
Photosystem II protein D1 A2 344 Cyanidium Caldarium MTVTLERRESTSLWERFCSWITSTENRLYIGWFGVLMIPCLLTATTVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPTSNAIGLHLYPIWEAASLDEWLYNGGPYQLVVLHFLLGVAAYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGALFSAMHGSLVTSSLIRETTENESPNYGYKLGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWLTSIGISTMAFNLNGLNFNQSIVDSQGRVINTWADIINRANLGIEVMHERNAHNFPLDLA
Photosystem II reaction center protein K K1 41 Cyanidium Caldarium MIINQLPETYNIFAPIIDIMPVIPILFLLLAFVWQAAVGFR
Photosystem II reaction center protein K K2 41 Cyanidium Caldarium MIINQLPETYNIFAPIIDIMPVIPILFLLLAFVWQAAVGFR
Photosystem II reaction center protein L L1 38 Cyanidium Caldarium MSGINPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN
Photosystem II reaction center protein L L2 38 Cyanidium Caldarium MSGINPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN
PHOTOSYSTEM II REACTION CENTER PROTEIN M M1 108 Cyanidium Caldarium MLGFLSNHLVLCRSRLPLQNNKFTSAKRVGGATYVARPCMLLNILPVQEGVKHLTHIAPMYLSSESGGMVVQEGGYLAVLLGVLFPVAFLIILYIQSEARNAGMREAA
PHOTOSYSTEM II REACTION CENTER PROTEIN M M2 108 Cyanidium Caldarium MLGFLSNHLVLCRSRLPLQNNKFTSAKRVGGATYVARPCMLLNILPVQEGVKHLTHIAPMYLSSESGGMVVQEGGYLAVLLGVLFPVAFLIILYIQSEARNAGMREAA
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO O1 329 Cyanidium Caldarium MLGFVSGTASLTKKRGGRSAQACGSAVTRLRLQAGEPQPVLAKGRLPSVTAFAAAVLLAAATHSAVLEPVQALTAQDVRQLSYEQVKGTGLANRCPEVVSSKGKISLDKTKKYKVVDLCLEPKQFLVEEEVGRRRGESKREFVDTKLMTRATYTLANIEGELVNENGTWKFIEKDGMDYAATTVQIPGGERVPFLFSIKKLVASLNNADDGISTSTELGGEFKVPSYRTGMFLDPKGRGMANGYDMAVALPALEADGAVGQEVLRKENDKVFQETSGRIELAVNKVDPTSNEIGGVFVSEQLSDTDMGAKEPKKLLLKGVFYARILPSD
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO O2 329 Cyanidium Caldarium MLGFVSGTASLTKKRGGRSAQACGSAVTRLRLQAGEPQPVLAKGRLPSVTAFAAAVLLAAATHSAVLEPVQALTAQDVRQLSYEQVKGTGLANRCPEVVSSKGKISLDKTKKYKVVDLCLEPKQFLVEEEVGRRRGESKREFVDTKLMTRATYTLANIEGELVNENGTWKFIEKDGMDYAATTVQIPGGERVPFLFSIKKLVASLNNADDGISTSTELGGEFKVPSYRTGMFLDPKGRGMANGYDMAVALPALEADGAVGQEVLRKENDKVFQETSGRIELAVNKVDPTSNEIGGVFVSEQLSDTDMGAKEPKKLLLKGVFYARILPSD
Photosystem II reaction center protein T T1 32 Cyanidium Caldarium MEALVYVFLLIGTLVVIFFAIFFRDPPRIAKK
Photosystem II reaction center protein T T2 32 Cyanidium Caldarium MEALVYVFLLIGTLVVIFFAIFFRDPPRIAKK
Photosystem II 12 kDa extrinsic protein, chloroplastic U1 155 Cyanidium Caldarium MMAFISTPLGKVTVKSATVSANRRGLRMQSDSEPVVSRRALLSGALAAAVAAALARARPAQARIDYEGIGYLGGGDKIDVNNANVRAYRKFPGLYPTAAKKIVQGGPYGTPDDILKNPELSERDKEVIKKYMDRFVALPPTPEYFTDRVNNGIYK
Photosystem II 12 kDa extrinsic protein, chloroplastic U2 155 Cyanidium Caldarium MMAFISTPLGKVTVKSATVSANRRGLRMQSDSEPVVSRRALLSGALAAAVAAALARARPAQARIDYEGIGYLGGGDKIDVNNANVRAYRKFPGLYPTAAKKIVQGGPYGTPDDILKNPELSERDKEVIKKYMDRFVALPPTPEYFTDRVNNGIYK
Cytochrome c-550 V1 155 Cyanidium Caldarium MFVKMIGWLVLFLFAHQTWAIEVAKDTNGGILNIAPEQLKRGKRLFNSHCSSCHVGGITKTNPNIGLDLESLSLATPPRNNLDALVDYMKNPTTYDGSESIAQIHPSIASSDIFPKMRDLSEDDLYAIAAHILTQPQIQAEKWGGGKIYYTKRSM
Cytochrome c-550 V2 155 Cyanidium Caldarium MFVKMIGWLVLFLFAHQTWAIEVAKDTNGGILNIAPEQLKRGKRLFNSHCSSCHVGGITKTNPNIGLDLESLSLATPPRNNLDALVDYMKNPTTYDGSESIAQIHPSIASSDIFPKMRDLSEDDLYAIAAHILTQPQIQAEKWGGGKIYYTKRSM
Photosystem II reaction center protein Ycf12 Y1 35 Cyanidium Caldarium MLNWQVIVQLVFLALIITTGPVIIVYLSTRERNLL
Photosystem II reaction center protein Ycf12 Y2 35 Cyanidium Caldarium MLNWQVIVQLVFLALIITTGPVIIVYLSTRERNLL
PHOTOSYSTEM II REACTION CENTER PROTEIN X X1 40 Cyanidium Caldarium MTPSLAAFFWSLIWAAVLVILPITGAIIWVSQQDKLRRDY
PHOTOSYSTEM II REACTION CENTER PROTEIN X X2 40 Cyanidium Caldarium MTPSLAAFFWSLIWAAVLVILPITGAIIWVSQQDKLRRDY
PEPTIDE CHAIN UNASSIGNED S1 46 Cyanidium Caldarium AAAAALALLAAALALVAVVFAVVLALFAAWAAAFAAAAFAALFLAA
PEPTIDE CHAIN UNASSIGNED S2 46 Cyanidium Caldarium AAAAALALLAAALALVAVVFAVVLALFAAWAAAFAAAAFAALFLAA
Photosystem II CP47 reaction center protein B1 509 Cyanidium Caldarium MALPWYRVHTVVLNDPGRLISVHLMHTALVSGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGLWSFEGVALTHIVLSGLLFLASIWHWVYWDLDLFRDPRTLEPALDLPKVFGIHLVLSSLLCFGFGAFHVTGLFGPGIWISDAYGLTGRIQSVAPAWGPEGFNPFNPGGIASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSIAAVFFASFVVSGTMWYGAASTPIELFGPTRYQWDSGYFQQEIEKRVEESLSNGLSLPEAWSNIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGHELIVRRMPAFFENFPIILVDKDGIIRADIPFRRAESKYSIEQVGVTCSFYGGKLNNQSFKDASTVKKYARKAQFGEVFEFDRTILDSDGVFRSSPRGWFTFGHANFALLFFFGHLWHGSRTLFRDVFAGIGAEVTEQVEFGVFQKVGDKTTKKQGYV
Photosystem II CP47 reaction center protein B2 509 Cyanidium Caldarium MALPWYRVHTVVLNDPGRLISVHLMHTALVSGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGLWSFEGVALTHIVLSGLLFLASIWHWVYWDLDLFRDPRTLEPALDLPKVFGIHLVLSSLLCFGFGAFHVTGLFGPGIWISDAYGLTGRIQSVAPAWGPEGFNPFNPGGIASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSIAAVFFASFVVSGTMWYGAASTPIELFGPTRYQWDSGYFQQEIEKRVEESLSNGLSLPEAWSNIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGHELIVRRMPAFFENFPIILVDKDGIIRADIPFRRAESKYSIEQVGVTCSFYGGKLNNQSFKDASTVKKYARKAQFGEVFEFDRTILDSDGVFRSSPRGWFTFGHANFALLFFFGHLWHGSRTLFRDVFAGIGAEVTEQVEFGVFQKVGDKTTKKQGYV
PEPTIDE CHAIN UNASSIGNED W1 25 Cyanidium Caldarium AAWFAVSAVALVVVAAVLVAVAAAA
PEPTIDE CHAIN UNASSIGNED W2 25 Cyanidium Caldarium AAWFAVSAVALVVVAAVLVAVAAAA
Extrinsic protein in photosystem II Q1 218 Cyanidium Caldarium MFVGTSGIFGERLCSRLMIKRAQGVRSTVGRGARVTTAKLADDTPLDRRQLLQWVAATSATVLIGKALPSSAAGEPKMSFFGADAPSSPFTYNEREGEPVYKGITPELLNEYRASINGAKKRIEDAGEAIAKKSWEDVRSALRLAVGTLRSVCSKVNSYAMAQATKQEKQNIEKAYREFLKRIEDMDFAARMKDQDRAERLRTASISALDNWMSVVGI
Extrinsic protein in photosystem II Q2 218 Cyanidium Caldarium MFVGTSGIFGERLCSRLMIKRAQGVRSTVGRGARVTTAKLADDTPLDRRQLLQWVAATSATVLIGKALPSSAAGEPKMSFFGADAPSSPFTYNEREGEPVYKGITPELLNEYRASINGAKKRIEDAGEAIAKKSWEDVRSALRLAVGTLRSVCSKVNSYAMAQATKQEKQNIEKAYREFLKRIEDMDFAARMKDQDRAERLRTASISALDNWMSVVGI
Photosystem II reaction center protein Z Z2 62 Cyanidium Caldarium MSIILQILVVALIVYSFVLIVAVPITLSTASGWSKSKSSIVTASIGWVGMVLLTGVLNSFVS
Photosystem II CP43 reaction center protein C1 460 Cyanidium Caldarium MLFNKDKNNIGGRSIESTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFETSHFIPEKPLYEQGMILLPHLATLGWGVAPGGEIVNTYPYFATGVIHLVSSAVLGFGGIYHSIVGPDVLEDSFSFFGYDWRDKNKMTTILGIHLILLGIGAFLLVIKALFIGGIYDTWAPGGGDIRFITNPTLNPAIIFSYLLKSPFGGEGWIVGVNNMEDVIGGHIWIGVTCVIGGIWHILTRPFSWARRAFVWSGEAYLSYSLGALALMGQTAAEYAWYNNTVYPSEFYGPTAAEASQAQAFTFLVRDQRLGANIASTQGPTGLGKYLMRSPTGEVILGGETMRFWDLRAPWLEPLRSSNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLTTSHFFLGFFIFIGHLWHAGRARAAAAGFEKGINRENEPVLSMRPLD
Photosystem II CP43 reaction center protein C2 460 Cyanidium Caldarium MLFNKDKNNIGGRSIESTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFETSHFIPEKPLYEQGMILLPHLATLGWGVAPGGEIVNTYPYFATGVIHLVSSAVLGFGGIYHSIVGPDVLEDSFSFFGYDWRDKNKMTTILGIHLILLGIGAFLLVIKALFIGGIYDTWAPGGGDIRFITNPTLNPAIIFSYLLKSPFGGEGWIVGVNNMEDVIGGHIWIGVTCVIGGIWHILTRPFSWARRAFVWSGEAYLSYSLGALALMGQTAAEYAWYNNTVYPSEFYGPTAAEASQAQAFTFLVRDQRLGANIASTQGPTGLGKYLMRSPTGEVILGGETMRFWDLRAPWLEPLRSSNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLTTSHFFLGFFIFIGHLWHAGRARAAAAGFEKGINRENEPVLSMRPLD
Photosystem II D2 protein D1 351 Cyanidium Caldarium MTIAIGREQERGWFDLLDDWLKRDRFVFIGWSGILLFPCAYLALGAWFTGTTFVSSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGSFGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEASDTFRAFTPTQSEETYSMVTANRFWSQIFGVAFANKRWLHFFLLFVPVTGLWVSSIGIVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Photosystem II D2 protein D2 351 Cyanidium Caldarium MTIAIGREQERGWFDLLDDWLKRDRFVFIGWSGILLFPCAYLALGAWFTGTTFVSSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGSFGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEASDTFRAFTPTQSEETYSMVTANRFWSQIFGVAFANKRWLHFFLLFVPVTGLWVSSIGIVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Cytochrome b559 subunit alpha E1 84 Cyanidium Caldarium MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFSENRQQVPLINDRFNAREELDDLTSNL
Cytochrome b559 subunit alpha E2 84 Cyanidium Caldarium MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFSENRQQVPLINDRFNAREELDDLTSNL
Cytochrome b559 subunit beta F1 43 Cyanidium Caldarium MANKPLQPISYPIFTFRWLAIHGLAIPTVFFFGAITAMQFIQR
Cytochrome b559 subunit beta F2 43 Cyanidium Caldarium MANKPLQPISYPIFTFRWLAIHGLAIPTVFFFGAITAMQFIQR
Photosystem II reaction center protein H H1 67 Cyanidium Caldarium MALKTRLGELLRPLNSQYGKVAPGWGTTPIMGIFMALFLLFLIIILQIYNSSLILENLDISWTTLGI
Photosystem II reaction center protein H H2 67 Cyanidium Caldarium MALKTRLGELLRPLNSQYGKVAPGWGTTPIMGIFMALFLLFLIIILQIYNSSLILENLDISWTTLGI
Photosystem II reaction center protein I I1 38 Cyanidium Caldarium MFTLKIFVYSCVAFFCSLFIFGFLSNDPSRNPNRKDLE
Photosystem II reaction center protein I I2 38 Cyanidium Caldarium MFTLKIFVYSCVAFFCSLFIFGFLSNDPSRNPNRKDLE
Photosystem II reaction center protein J J1 39 Cyanidium Caldarium MNSTGRIPLWLVVTFGGIVVLTVLGIFIYGSYSGLGSSL
Photosystem II reaction center protein J J2 39 Cyanidium Caldarium MNSTGRIPLWLVVTFGGIVVLTVLGIFIYGSYSGLGSSL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-03-19
Deposition Author(s): Ago, H. , Shen, J.-R.