4YM5
Crystal structure of the human nucleosome containing 6-4pp (inside)
PDB DOI: 10.2210/pdb4ym5/pdb
Classification: STRUCTURAL PROTEIN/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2015-03-06 Deposition Author(s): Hanaoka, F. , Hasegawa, M. , Horikoshi, N. , Iwai, S. , Kagawa, W. , Kurumizaka, H. , Matsumoto, N. , Matsumoto, S. , Osakabe, A. , Sugasawa, K. , Tachiwana, H. , Thoma, N.H. , Toga, T. , Yamamoto, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 4.005 Å
Crystal structure of the human nucleosome containing 6-4pp (inside)
Hanaoka, F. , Hasegawa, M. , Horikoshi, N. , Iwai, S. , Kagawa, W. , Kurumizaka, H. , Matsumoto, N. , Matsumoto, S. , Osakabe, A. , Sugasawa, K. , Tachiwana, H. , Thoma, N.H. , Toga, T. , Yamamoto, J.
Primary Citation of Related Structures: 4YM5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 139 | Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 139 | Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 106 | Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 106 | Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 133 | Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A type 1-B/E | G | 133 | Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B type 1-J | D | 129 | Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-J | H | 129 | Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 144 mer-DNA | i | 144 | NA | ATCAATATCCACCTGCAGATTCTACCAAXGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAACCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACAATTGGTAGAATCTGCAGGTGGATATTGAT |
| 144-mer DNA | j | 144 | NA | ATCAATATCCACCTGCAGATTCTACCAAXGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGTTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACAATTGGTAGAATCTGCAGGTGGATATTGAT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2015-03-06 Deposition Author(s): Hanaoka, F. , Hasegawa, M. , Horikoshi, N. , Iwai, S. , Kagawa, W. , Kurumizaka, H. , Matsumoto, N. , Matsumoto, S. , Osakabe, A. , Sugasawa, K. , Tachiwana, H. , Thoma, N.H. , Toga, T. , Yamamoto, J.