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4YIG

Vaccinia virus d4/a20(1-50) in complex with dsdna containing an abasic site and free uracyl

PDB DOI: 10.2210/pdb4yig/pdb

Classification: HYDROLASE
Organism(s): Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct

Deposited: 2015-03-02
Deposition Author(s): Burmeister, W.P. , Iseni, F. , Tarbouriech, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

4yig
Literature

Vaccinia virus d4/a20(1-50) in complex with dsdna containing an abasic site and free uracyl

Burmeister, W.P. , Iseni, F. , Tarbouriech, N.

Primary Citation of Related Structures: 4YIG


Proteins
Molecule Chains Sequence Length Organism Sequence
Uracil-DNA glycosylase A 232 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct MGSSHHHHHHSQDPMNSVTVSHAPYTITYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFEKDRSFEIINVLLELDNKVPINWAQGFIY
Uracil-DNA glycosylase E 232 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct MGSSHHHHHHSQDPMNSVTVSHAPYTITYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFEKDRSFEIINVLLELDNKVPINWAQGFIY
Uracil-DNA glycosylase I 232 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct MGSSHHHHHHSQDPMNSVTVSHAPYTITYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFEKDRSFEIINVLLELDNKVPINWAQGFIY
DNA polymerase processivity factor component A20 B 52 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct GAMASSADLTNLKELLSLYKSLRFSDSAAIEKYNSLVEWGTSTYWKIGVQKV
DNA polymerase processivity factor component A20 F 52 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct GAMASSADLTNLKELLSLYKSLRFSDSAAIEKYNSLVEWGTSTYWKIGVQKV
DNA polymerase processivity factor component A20 J 52 Vaccinia Virus , Vaccinia Virus (Strain Copenhagen) , Synthetic Construct GAMASSADLTNLKELLSLYKSLRFSDSAAIEKYNSLVEWGTSTYWKIGVQKV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3') c 10 NA CTGTXATCTT
DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3') g 10 NA CTGTXATCTT
DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3') k 10 NA CTGTXATCTT
DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3') d 10 NA AAGATAACAG
DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3') h 10 NA AAGATAACAG
DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3') l 10 NA AAGATAACAG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-03-02
Deposition Author(s): Burmeister, W.P. , Iseni, F. , Tarbouriech, N.