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4YD2

Nicked complex of human dna polymerase mu with 2-nt gapped dna substrate

PDB DOI: 10.2210/pdb4yd2/pdb

Classification: transferase/dna
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2015-02-20
Deposition Author(s): Bebenek, K. , Gosavi, R.A. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.471 Å

4yd2
Literature

Nicked complex of human dna polymerase mu with 2-nt gapped dna substrate

Bebenek, K. , Gosavi, R.A. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C.

Primary Citation of Related Structures: 4YD2


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed DNA/RNA polymerase mu A 354 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAAASPAWMPAYACQRPTPLTHHNTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRVVQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKLTQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVDFLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQSHMDAFERSFCIFRLPQPGSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLFDPEQKTFFQAASEEDIFRHLGLEYLPPEQRNA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*GP*CP*AP*AP*T)-3') t 10 NA CGGCAATACG
DNA (5'-D(*CP*GP*TP*AP*T)-3') p 5 NA CGTAT
DNA (5'-D(P*GP*CP*CP*G)-3') d 4 NA GCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-02-20
Deposition Author(s): Bebenek, K. , Gosavi, R.A. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C.