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FASTA Sequence PDB Format mmCIF Format
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4XJN

Structure of the parainfluenza virus 5 nucleocapsid-rna complex: an insight into paramyxovirus polymerase activity

PDB DOI: 10.2210/pdb4xjn/pdb

Classification: VIRAL PROTEIN/RNA
Organism(s): Escherichia Coli , Parainfluenza Virus 5

Deposited: 2015-01-08
Deposition Author(s): Alayyoubi, M. , Kors, C.A. , Lamb, R.A. , Leser, G.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.11 Å

4xjn
Literature

Structure of the parainfluenza virus 5 nucleocapsid-rna complex: an insight into paramyxovirus polymerase activity

Alayyoubi, M. , Kors, C.A. , Lamb, R.A. , Leser, G.P.

Primary Citation of Related Structures: 4XJN


Proteins
Molecule Chains Sequence Length Organism Sequence
Nucleocapsid A 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid B 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid C 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid D 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid E 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid F 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid G 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid H 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid I 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid J 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid K 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid L 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI
Nucleocapsid M 525 Escherichia Coli , Parainfluenza Virus 5 HHHHHHSSGLVPRGSHMSSVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGALLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLNHATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMTAPDQPAASIEKRLQKYRQQGRINPRYLLQPEARRIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLALAAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSYMNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKLTTANRGADTRGGVNPFSSVTGTTQVPAAATGDTLESYMAADRLRQRYADAGTHDDEMPPLEEEEEDDTSAGPRTGPTLEQVALDIQNAAVGAPIHTDDLNAALGDLDI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (78-MER) n 78 NA UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-01-08
Deposition Author(s): Alayyoubi, M. , Kors, C.A. , Lamb, R.A. , Leser, G.P.