4WZ7
Crystal structure of mitochondrial nadh:ubiquinone oxidoreductase from yarrowia lipolytica.
PDB DOI: 10.2210/pdb4wz7/pdb
Classification: OXIDOREDUCTASE Organism(s): Yarrowia Lipolytica
Deposited: 2014-11-18 Deposition Author(s): Brandt, U. , Hunte, C. , Wirth, C. , Zickermann, V.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.6 Å
Crystal structure of mitochondrial nadh:ubiquinone oxidoreductase from yarrowia lipolytica.
Brandt, U. , Hunte, C. , Wirth, C. , Zickermann, V.
Primary Citation of Related Structures: 4WZ7
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH-ubiquinone oxidoreductase chain 1 | 1 | 327 | Yarrowia Lipolytica | MIINIVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLGSIRSTAQLISYELILTSIFIIIIMFVSSLNITTIIXXXXXXXXXXXXXXXXFIASVAETARPPFDLTESESELVAGYFTEXXXXXXVFFFLAEYSNIILISAFNGYLLLGGXXXXXXXXXXXXXXXXXXXXXXXXXGLINSSAYAIKLVFLMFSFIWVRAAXXXXXXDNLINFCWIILLPLLFGIFLIIPSTLYIFDSFPTLI |
| 39-kDa subunit | E | 195 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| NUGM protein | G | 133 | Yarrowia Lipolytica | XXXHQYAKYIMAALPKYIQGFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVPSITCLYEGANWFEREAYDMYGVFFEGHPDLRRIMTDYGFEGHP |
| Subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | H | 154 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTPCQLCGSDGIMEAVQXXXGXGXGXXXXXGXXXXXXCXGACXXXXXXXXXXXXXXXXXXXXXGXXXGXXXXXXXXXGXXXXXXXXXX |
| Subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | I | 137 | Yarrowia Lipolytica | XXXXXXFLLAEMFRGLYXXXXXXXXXXXXXXXXXXXXXXXXCIACKLCEAICPALAXXXXXXXXXXXTTKYDIDMTKCIYCGYCQESCPVDAIVETPNVEYATETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | K | 183 | Yarrowia Lipolytica | SAPAGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRNTKITRMWYRK |
| NADH-ubiquinone oxidoreductase chain 4L | L | 89 | Yarrowia Lipolytica | MFIGTIILVLSFLGFVFNRRNIILAFICLETMLLGINLILLRNSVLFDDISGSLFAIVIIILAGVESAIGLSLLVSYYRLRGVINSYGI |
| unknown subunits 1 | Z | 57 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits 1 | D | 57 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits 2 | F | 54 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | J | 63 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | M | 29 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| NADH dehydrogenase subunit 2 | 2 | 438 | Yarrowia Lipolytica | MLILAIISLITFVSMSKLSDNRAIIXXXXXXXXXXXXXXXXXYLLFLNNQTYTVMGELLIFNSFTFYIDMLIYFIMIVISSLYGXXXXXXXXXXXXXXXXXXXXXXXSNDFITLFVAIELQSYSIYLITAIYNSSYKASKASMLYFFMGGILSILIAYSINTYYSVLNSYTLHSLDSLIINTLDLNLILIALSLGLLFKIGIAPLHKWLISIYENTPILITIYISLIPKISILSYLVLXXXXXXXXXXSILAILTLLVGSVGGLLQIKIKRLLAFSGLTNAGYMMLLLLLNNNEFSYLYYITQYSISHLAIFMIIIXXXXXXXXXXXXXXXXXXXXXXXXXLVLSMAIVVFSFIGIPPLLGFFGKLNILMSILNNGYYFISIVLIVASLISALYYLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | N | 50 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | O | 70 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | P | 46 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | Q | 51 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | R | 30 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | S | 69 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | T | 15 | Yarrowia Lipolytica | XXXXXXXXXXXXXXX |
| unknown subunits | AH | 15 | Yarrowia Lipolytica | XXXXXXXXXXXXXXX |
| unknown subunits | U | 26 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | V | 22 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | W | 9 | Yarrowia Lipolytica | XXXXXXXXX |
| unknown subunits | AB | 9 | Yarrowia Lipolytica | XXXXXXXXX |
| unknown subunits | AY | 9 | Yarrowia Lipolytica | XXXXXXXXX |
| unknown subunits | BE | 9 | Yarrowia Lipolytica | XXXXXXXXX |
| NADH-ubiquinone oxidoreductase chain 3 | 3 | 89 | Yarrowia Lipolytica | MNTFIIFIILIPIVGFALXXXXXXXXXXXXXXXXILVAILFLPFDLEISTLLPYVMSIYLVSNYGFTIVLLFLLILIIGFVXXXXXXXX |
| unknown subunits | X | 16 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXX |
| unknown subunits | AJ | 16 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXX |
| unknown subunits | AV | 16 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXX |
| unknown subunits | BH | 16 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXX |
| unknown subunits | Y | 13 | Yarrowia Lipolytica | XXXXXXXXXXXXX |
| unknown subunits | AR | 13 | Yarrowia Lipolytica | XXXXXXXXXXXXX |
| unknown subunits | AT | 13 | Yarrowia Lipolytica | XXXXXXXXXXXXX |
| unknown subunits | AA | 18 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXX |
| unknown subunits | AW | 18 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXX |
| unknown subunits | BB | 18 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXX |
| unknown subunits | BG | 18 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXX |
| unknown subunits | AC | 47 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AD | 47 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AE | 48 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AF | 35 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AG | 25 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AI | 36 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AL | 36 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AK | 76 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AN | 76 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AM | 17 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXX |
| NADH-ubiquinone oxidoreductase chain 4 | 4 | 470 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFYILFEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSLFMLLSIVVISXXXXXXXXXXXXXXVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLALYAILRLLLPLLCEAQILYTPMIYIISLLTIILTSLATLRQIDLKVIIAYSSISHMGIAILGVCSNTSLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKGLTTYMPQLATYIIILSFANIGTPLTGNFTGEFLSLQGGFIRNPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIMNILIISTLIIGICPQIMXXXXXXXXXXXXXXX |
| unknown subunits | AO | 32 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AP | 11 | Yarrowia Lipolytica | XXXXXXXXXXX |
| unknown subunits | AS | 11 | Yarrowia Lipolytica | XXXXXXXXXXX |
| unknown subunits | AQ | 8 | Yarrowia Lipolytica | XXXXXXXX |
| unknown subunits | BA | 8 | Yarrowia Lipolytica | XXXXXXXX |
| unknown subunits | AU | 58 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AX | 39 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | AZ | 40 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| unknown subunits | BC | 20 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXX |
| unknown subunits | BD | 19 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXX |
| unknown subunits | BF | 19 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXX |
| unknown subunits | BI | 905 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| NADH-ubiquinone oxidoreductase chain 5 | 5 | 619 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDINYNFEIDALTITMLLAITTISSMVHIYSIGYMETDPHQVRFFSLLSMFTFWMIILVTGSNYFVLFVGWEFIGVTSYLLISFWVTRLQAMKSALSAVLMNRFGDAFFVLGLCVIAYVFGXXXXXXXXXXXXXTDLLVLIMLALFIAAMAKSAQFGLHNWLTLAMEGPTPVSSLLHAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRIIALSTMSQLGMMTIAIGLSAYNLALFHLLGHAFFKALLFMSAGSIIHSILXXXXXXXXXXXXXXXLPYTYICITIASLSLMAMPGLTGYYTKDIIIESTYGSXXXXXXXAYLSAVLTCVYSMKILYLTFXXXXXXXXXXXXXXTLPMFILAIFAMFAGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTSGNIAHHVDKGSLYRLGPVGIXXXXXXXXXXXXXXXMNSMLILITIVSLLLLVLVMNVNFIIVIPVLISILYILF |
| NADH-ubiquinone oxidoreductase chain 6 | 6 | 185 | Yarrowia Lipolytica | MMYLTYYFIEITIFLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIMIYIGAIAVLFLFIITLLDINSTELSVKSNIRDLPLVLISLIVLTISGLMIYSNDSILINKLLEAFGNDYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITMKHKE |
| NUAM protein | A | 628 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXLAIAGNCXXXXXXXXXPVASCAXXXAPGMVVXXXXXXXXXXXENVMEMMLAAACAACAAGGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIHCTRCVRFANDIAGAXXXXXXXXXXXXXXXXXXXXGXXXGXXGXXXXXCXXGXXXXXXXXXXXXXXXXXXGXXXXXXXXXVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| NUBM protein | B | 370 | Yarrowia Lipolytica | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGLKWSFMXXXXXXXXXXXXXXXXXXMRKDPHKLVEGCLLAGRAMNATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGQCTPCREGTTXXXXXXXXXXXXXXXEREIDMLYELTKDIEGHTICALGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| NUCM protein | C | 444 | Yarrowia Lipolytica | ATTALPQDPIPSGALGQKVPHVDESHQDLLFRTSHMVEDLETYDEDSPINTSDANTRIRAFTINFGPQHPAAHGVLRLILELSGEEIIXXXXXXXXLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-11-18 Deposition Author(s): Brandt, U. , Hunte, C. , Wirth, C. , Zickermann, V.