PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4V6K

Structural insights into cognate vs. near-cognate discrimination during decoding.

PDB DOI: 10.2210/pdb4v6k/pdb

Classification: RIBOSOME
Organism(s): Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara

Deposited: 2011-01-07
Deposition Author(s): Agirrezabala, X. , Frank, J. , Green, R. , Lei, J. , Ortiz-Meoz, R.F. , Schreiner, E. , Schulten, K. , Trabuco, L.G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 8.25 Å

4v6k
Literature

Structural insights into cognate vs. near-cognate discrimination during decoding.

Agirrezabala, X. , Frank, J. , Green, R. , Lei, J. , Ortiz-Meoz, R.F. , Schreiner, E. , Schulten, K. , Trabuco, L.G.

Primary Citation of Related Structures: 4V6K


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L30 AA 59 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE
50S ribosomal protein L11 AJ 142 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
50S ribosomal protein L13 AK 142 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
50S ribosomal protein L14 AL 123 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEVL
50S ribosomal protein L15 AM 144 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
50S ribosomal protein L16 AN 136 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
50S ribosomal protein L17 AO 127 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAAAE
50S ribosomal protein L18 AP 117 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
50S ribosomal protein L19 AQ 115 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN
50S ribosomal protein L20 AR 118 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA
50S ribosomal protein L21 AS 103 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA
50S ribosomal protein L31 AB 70 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK
50S ribosomal protein L22 AT 110 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR
50S ribosomal protein L23 AU 100 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE
50S ribosomal protein L24 AV 104 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
50S ribosomal protein L25 AW 94 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
50S ribosomal protein L27 AX 85 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
50S ribosomal protein L28 AY 78 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY
50S ribosomal protein L29 AZ 63 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA
50S ribosomal protein L1 AC 234 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN
50S ribosomal protein L2 AD 273 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK
50S ribosomal protein L3 AE 209 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA
50S ribosomal protein L4 AF 201 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA
50S ribosomal protein L5 AG 179 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
Elongation factor Tu 2 BC 393 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS
30S ribosomal protein S2 BF 241 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEAE
30S ribosomal protein S3 BG 233 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK
30S ribosomal protein S4 BH 206 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK
30S ribosomal protein S5 BI 167 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK
30S ribosomal protein S6 BJ 135 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE
30S ribosomal protein S7 BK 179 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRWLSLRSFSHQAGASSKQPALGYLN
30S ribosomal protein S8 BL 130 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA
30S ribosomal protein S9 BM 130 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
30S ribosomal protein S10 BN 103 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG
30S ribosomal protein S11 BO 129 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
30S ribosomal protein S12 BP 124 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
30S ribosomal protein S13 BQ 118 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK
30S ribosomal protein S14 BR 101 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
30S ribosomal protein S15 BS 89 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLIERLGLRR
30S ribosomal protein S16 BT 82 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA
30S ribosomal protein S17 BU 84 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL
30S ribosomal protein S18 BV 75 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ
30S ribosomal protein S19 BW 92 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK
30S ribosomal protein S20 BX 87 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA
30S ribosomal protein S21 BY 71 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY
50S ribosomal protein L6 AH 177 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK
50S ribosomal protein L9 AI 149 Adineta Vaga , Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Jcm 5827 / Ccug 10774 / Nctc 10582 / Vpi-5482 / E50) , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Vaccinia Virus Ankara MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S ribosomal RNA ba 1542 NA AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA
A/T-site tRNA Phe bb 76 NA GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGXCCUUGGUUCGAUUCCGAGUCCGGGCACCA
A/T-site tRNA Phe be 76 NA GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGXCCUUGGUUCGAUUCCGAGUCCGGGCACCA
mRNA bd 24 NA AUUAUGUUUUUUUUUUGAUUUGCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2011-01-07
Deposition Author(s): Agirrezabala, X. , Frank, J. , Green, R. , Lei, J. , Ortiz-Meoz, R.F. , Schreiner, E. , Schulten, K. , Trabuco, L.G.