PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4UMM

The cryo-em structure of the palindromic dna-bound usp-ecr nuclear receptor reveals an asymmetric organization with allosteric domain positioning

PDB DOI: 10.2210/pdb4umm/pdb

Classification: NUCLEAR RECEPTOR
Organism(s): Brucella Melitensis Biotype 1 (Strain 16M / Atcc 23456 / Nctc 10094) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2014-05-19
Deposition Author(s): Billas, I.M.L. , Klaholz, B.P. , Maletta, M. , Moras, D. , Orlov, I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 11.6 Å

4umm
Literature

The cryo-em structure of the palindromic dna-bound usp-ecr nuclear receptor reveals an asymmetric organization with allosteric domain positioning

Billas, I.M.L. , Klaholz, B.P. , Maletta, M. , Moras, D. , Orlov, I.

Primary Citation of Related Structures: 4UMM


Proteins
Molecule Chains Sequence Length Organism Sequence
ECR-USP A 78 Brucella Melitensis Biotype 1 (Strain 16M / Atcc 23456 / Nctc 10094) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKREAVQEER
ECDYSONE RECEPTOR E 87 Brucella Melitensis Biotype 1 (Strain 16M / Atcc 23456 / Nctc 10094) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) RQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKR
GENE REGULATION PROTEIN F 264 Brucella Melitensis Biotype 1 (Strain 16M / Atcc 23456 / Nctc 10094) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AAVQELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNHAPPIDTNMM
ECDYSONE RECEPTOR G 266 Brucella Melitensis Biotype 1 (Strain 16M / Atcc 23456 / Nctc 10094) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMASMTGGQQMGRDPLKNVPPLTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLKLKNRKLPPFLEEIWDVADVA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP *AP*CP*TP*TP*GP*TP)-3' c 20 NA CAAGGGTTCAATGCACTTGT
5'-D(*DGP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*DAP *AP*CP*CP*CP*TP*T)-3' d 20 NA GACAAGTGCATTGAACCCTT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2014-05-19
Deposition Author(s): Billas, I.M.L. , Klaholz, B.P. , Maletta, M. , Moras, D. , Orlov, I.