Native structure of photosystem ii (dataset-1) by a femtosecond x-ray laser
PDB DOI: 10.2210/pdb4ub6/pdb
Classification: ELECTRON TRANSPORT, PHOTOSYNTHESIS Organism(s): Thermosynechococcus Vulcanus
Deposited: 2014-08-12 Deposition Author(s): Ago, H. , Akita, F. , Hirata, K. , Murakami, H. , Nakajima, Y. , Shen, J.R. , Shimizu, T. , Suga, M. , Ueno, G. , Yamamoto, M. , Yamashita, K.
Native structure of photosystem ii (dataset-1) by a femtosecond x-ray laser
Ago, H. , Akita, F. , Hirata, K. , Murakami, H. , Nakajima, Y. , Shen, J.R. , Shimizu, T. , Suga, M. , Ueno, G. , Yamamoto, M. , Yamashita, K.
Primary Citation of Related Structures: 4UB6
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Photosystem Q(B) protein | A | 344 | Thermosynechococcus Vulcanus | MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Vulcanus | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Vulcanus | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Vulcanus | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
Photosystem II manganese-stabilizing polypeptide | O | 244 | Thermosynechococcus Vulcanus | QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Vulcanus | METITYVFIFACIIALFFFAIFFREPPRITKK |
Photosystem II 12 kDa extrinsic protein | U | 104 | Thermosynechococcus Vulcanus | ATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
Cytochrome c-550 | V | 137 | Thermosynechococcus Vulcanus | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
Photosystem II reaction center protein Ycf12 | Y | 30 | Thermosynechococcus Vulcanus | EVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
Photosystem II reaction center protein X | X | 40 | Thermosynechococcus Vulcanus | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Vulcanus | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
Photosystem II CP47 chlorophyll apoprotein | B | 505 | Thermosynechococcus Vulcanus | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRK |
Photosystem II protein Y | R | 34 | Thermosynechococcus Vulcanus | DWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLL |
Photosystem II 44 kDa reaction center protein | C | 455 | Thermosynechococcus Vulcanus | NSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
Photosystem II D2 protein | D | 342 | Thermosynechococcus Vulcanus | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Vulcanus | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
Cytochrome b559 subunit beta | F | 44 | Thermosynechococcus Vulcanus | TSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
Photosystem II reaction center protein H | H | 65 | Thermosynechococcus Vulcanus | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Vulcanus | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
Photosystem II reaction center protein J | J | 39 | Thermosynechococcus Vulcanus | MSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Method: X-RAY DIFFRACTION
Deposited Date: 2014-08-12 Deposition Author(s): Ago, H. , Akita, F. , Hirata, K. , Murakami, H. , Nakajima, Y. , Shen, J.R. , Shimizu, T. , Suga, M. , Ueno, G. , Yamamoto, M. , Yamashita, K.