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FASTA Sequence PDB Format mmCIF Format
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4QIW

Crystal structure of euryarchaeal rna polymerase from thermococcus kodakarensis

PDB DOI: 10.2210/pdb4qiw/pdb

Classification: TRANSCRIPTION
Organism(s): Penicillium Sp.

Deposited: 2014-06-02
Deposition Author(s): Jun, S.-H. , Murakami, K.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.5 Å

4qiw
Literature

Crystal structure of euryarchaeal rna polymerase from thermococcus kodakarensis

Jun, S.-H. , Murakami, K.S.

Primary Citation of Related Structures: 4QIW


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase A 906 Penicillium Sp. MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE
DNA-directed RNA polymerase I 906 Penicillium Sp. MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE
DNA-directed RNA polymerase subunit N N 65 Penicillium Sp. MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY
DNA-directed RNA polymerase subunit N V 65 Penicillium Sp. MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY
DNA-directed RNA polymerase subunit P P 49 Penicillium Sp. MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI
DNA-directed RNA polymerase subunit P W 49 Penicillium Sp. MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI
DNA-directed RNA polymerase B 1123 Penicillium Sp. MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV
DNA-directed RNA polymerase J 1123 Penicillium Sp. MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV
DNA-directed RNA polymerase subunit A'' C 391 Penicillium Sp. MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE
DNA-directed RNA polymerase subunit A'' M 391 Penicillium Sp. MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE
DNA-directed RNA polymerase subunit D D 259 Penicillium Sp. MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD
DNA-directed RNA polymerase subunit D O 259 Penicillium Sp. MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD
DNA-directed RNA polymerase, subunit E' E 190 Penicillium Sp. MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE
DNA-directed RNA polymerase, subunit E' Q 190 Penicillium Sp. MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE
DNA-directed RNA polymerase, subunit F F 122 Penicillium Sp. MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE
DNA-directed RNA polymerase, subunit F R 122 Penicillium Sp. MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE
DNA-directed RNA polymerase subunit H H 82 Penicillium Sp. MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED
DNA-directed RNA polymerase subunit H S 82 Penicillium Sp. MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED
DNA-directed RNA polymerase subunit K K 57 Penicillium Sp. MFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS
DNA-directed RNA polymerase subunit K T 57 Penicillium Sp. MFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS
DNA-directed RNA polymerase subunit L L 100 Penicillium Sp. MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIEHHHHHH
DNA-directed RNA polymerase subunit L U 100 Penicillium Sp. MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2014-06-02
Deposition Author(s): Jun, S.-H. , Murakami, K.S.